Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48499 * 109.46854 * 270.00031 * 3 2 1 5 5 H 1.48498 * 109.46805 * 29.99885 * 3 2 1 6 6 H 1.48500 * 109.46686 * 150.00032 * 3 2 1 7 7 C 1.37880 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00173 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00017 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00126 * 179.97438 * 11 10 9 14 14 H 1.09000 * 112.74842 * 311.26713 * 13 11 10 15 15 C 1.53633 * 113.51651 * 82.06914 * 13 11 10 16 16 C 1.53517 * 83.53579 * 140.75792 * 15 13 11 17 17 N 1.47479 * 87.99753 * 334.02425 * 16 15 13 18 18 H 0.96994 * 120.00051 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47468 * 59.98933 * 9 7 2 20 20 H 1.09004 * 109.46718 * 299.99742 * 9 7 2 21 21 H 0.97006 * 120.00158 * 359.97438 * 10 9 7 22 22 H 1.09000 * 114.17137 * 27.13204 * 15 13 11 23 23 H 1.09000 * 114.20704 * 254.38792 * 15 13 11 24 24 H 1.09002 * 113.47888 * 219.22784 * 16 15 13 25 25 H 1.09003 * 113.47419 * 88.82117 * 16 15 13 26 26 H 1.00899 * 111.00117 * 138.66596 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7332 -6.0287 0.0005 14 1 3.5105 -5.9184 -0.7557 15 6 3.2804 -6.3682 1.3954 16 6 3.1467 -7.8167 0.9050 17 7 2.0869 -7.3544 -0.0105 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8904 21 1 3.1568 -3.4354 0.0002 22 1 2.6079 -6.1101 2.2135 23 1 4.3084 -6.0467 1.5626 24 1 2.7888 -8.5036 1.6719 25 1 4.0346 -8.1848 0.3908 26 1 2.1746 -7.7918 -0.9155 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306813204.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = -8.820741 kcal Electronic energy + Delta-G solvation = -10890.232864 eV Core-core repulsion = 8776.779586 eV Total energy + Delta-G solvation = -2113.453278 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.00943 -37.51294 -34.08556 -32.27420 -28.23544 -27.45697 -25.95988 -22.60424 -20.53184 -19.26413 -17.34687 -17.02685 -15.76056 -15.16789 -14.47332 -14.20253 -13.48162 -13.28097 -12.59796 -12.03312 -11.86100 -11.72466 -11.28409 -11.01855 -10.95677 -10.82241 -10.29930 -9.37710 -9.24769 -8.71093 -8.61381 -7.82430 -6.14758 -4.21758 3.24998 3.30879 3.33383 3.36375 3.87763 4.31988 4.42550 4.60516 4.90300 5.20583 5.22132 5.33561 5.51007 5.65354 5.76973 6.04790 6.08150 7.20755 7.35761 7.49721 7.55187 7.70546 7.99575 8.68229 8.82384 9.18488 9.45252 10.95532 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.091148 B = 0.008247 C = 0.007769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.118878 B = 3394.519152 C = 3603.329818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.507 3.493 12 O -0.537 6.537 13 C 0.007 3.993 14 H 0.091 0.909 15 C -0.129 4.129 16 C -0.001 4.001 17 N -0.598 5.598 18 H 0.266 0.734 19 H 0.026 0.974 20 H 0.026 0.974 21 H 0.389 0.611 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 -9.956 0.713 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.290 3.710 12 O -0.414 6.414 13 C -0.107 4.107 14 H 0.109 0.891 15 C -0.167 4.167 16 C -0.132 4.132 17 N -0.223 5.223 18 H 0.076 0.924 19 H 0.044 0.956 20 H 0.044 0.956 21 H 0.221 0.779 22 H 0.116 0.884 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.726 -9.919 1.156 12.626 hybrid contribution 1.756 0.962 -0.654 2.106 sum 9.482 -8.957 0.501 13.053 Atomic orbital electron populations 1.69977 1.06121 1.27281 1.48924 1.24959 0.94905 0.99440 0.94734 0.86414 0.79618 0.82675 0.78192 1.20491 1.21003 1.19745 1.21230 0.93241 0.90468 1.53159 0.91916 1.19090 0.88335 0.81949 0.97699 1.46427 1.10977 1.06012 1.72871 1.20050 0.89193 0.83763 0.77946 1.90661 1.16523 1.84631 1.49554 1.23270 0.95747 0.92431 0.99289 0.89076 1.23137 1.01752 0.95607 0.96167 1.23521 0.94290 0.97596 0.97749 1.67217 1.39557 1.01922 1.13571 0.92449 0.95629 0.95580 0.77890 0.88389 0.90014 0.89526 0.91730 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.68 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 15 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 15 9 C 0.25 6.79 5.43 -5.20 -0.03 6.76 15 10 N -0.71 -15.41 5.55 -61.48 -0.34 -15.75 15 11 C 0.51 10.66 7.41 -10.99 -0.08 10.58 15 12 O -0.54 -13.91 16.66 5.56 0.09 -13.82 15 13 C 0.01 0.11 4.41 -72.51 -0.32 -0.21 15 14 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 15 C -0.13 -1.59 8.01 -26.13 -0.21 -1.80 15 16 C 0.00 -0.01 8.61 -7.54 -0.06 -0.08 15 17 N -0.60 -8.73 8.14 -116.49 -0.95 -9.68 15 18 H 0.27 7.41 8.31 -40.82 -0.34 7.08 15 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.39 7.11 8.32 -40.82 -0.34 6.77 15 22 H 0.10 1.39 8.11 -51.93 -0.42 0.97 15 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 15 26 H 0.32 3.96 8.91 -39.29 -0.35 3.61 15 LS Contribution 233.20 15.07 3.51 3.51 Total: -1.00 -33.40 233.20 -6.27 -39.67 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.18 Total: 4.11 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.12 Total: 1.72 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.55 Total: -51.11 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -33.40 -6.27 -39.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813204.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.850 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds