Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48499 * 109.46854 * 270.00031 * 3 2 1 5 5 H 1.48498 * 109.46805 * 29.99885 * 3 2 1 6 6 H 1.48500 * 109.46686 * 150.00032 * 3 2 1 7 7 C 1.37880 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00173 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00017 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00126 * 179.97438 * 11 10 9 14 14 H 1.09000 * 112.74842 * 311.26713 * 13 11 10 15 15 C 1.53633 * 113.51651 * 82.06914 * 13 11 10 16 16 C 1.53517 * 83.53579 * 140.75792 * 15 13 11 17 17 N 1.47479 * 87.99753 * 334.02425 * 16 15 13 18 18 H 0.96994 * 120.00051 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47468 * 59.98933 * 9 7 2 20 20 H 1.09004 * 109.46718 * 299.99742 * 9 7 2 21 21 H 0.97006 * 120.00158 * 359.97438 * 10 9 7 22 22 H 1.09000 * 114.17137 * 27.13204 * 15 13 11 23 23 H 1.09000 * 114.20704 * 254.38792 * 15 13 11 24 24 H 1.09002 * 113.47888 * 219.22784 * 16 15 13 25 25 H 1.09003 * 113.47419 * 88.82117 * 16 15 13 26 26 H 1.00899 * 111.00117 * 138.66596 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7332 -6.0287 0.0005 14 1 3.5105 -5.9184 -0.7557 15 6 3.2804 -6.3682 1.3954 16 6 3.1467 -7.8167 0.9050 17 7 2.0869 -7.3544 -0.0105 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8904 21 1 3.1568 -3.4354 0.0002 22 1 2.6079 -6.1101 2.2135 23 1 4.3084 -6.0467 1.5626 24 1 2.7888 -8.5036 1.6719 25 1 4.0346 -8.1848 0.3908 26 1 2.1746 -7.7918 -0.9155 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306813204.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = -37.780177 kcal Electronic energy + Delta-G solvation = -10891.488640 eV Core-core repulsion = 8776.779586 eV Total energy + Delta-G solvation = -2114.709054 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.31426 -39.06750 -36.10386 -34.33380 -30.00579 -28.60560 -27.46611 -24.55495 -21.97740 -20.70682 -19.00403 -18.16761 -17.61140 -16.99120 -16.24619 -15.90906 -15.03650 -14.51720 -14.18818 -14.00310 -13.67347 -12.91776 -12.83943 -12.71252 -12.25775 -12.21705 -12.16255 -11.49275 -10.80628 -10.70199 -9.86460 -9.82368 -8.29207 -6.46558 1.43380 1.46293 1.57632 1.74335 2.29787 2.51086 3.05527 3.32720 3.45373 3.87374 4.08966 4.27570 4.48555 4.81393 4.86233 4.99163 5.13125 5.16510 5.21875 5.48782 5.70524 5.84248 6.30453 6.64801 6.94952 7.23354 7.53016 8.83323 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.091148 B = 0.008247 C = 0.007769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.118878 B = 3394.519152 C = 3603.329818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.705 5.705 11 C 0.499 3.501 12 O -0.596 6.596 13 C 0.015 3.985 14 H 0.133 0.867 15 C -0.126 4.126 16 C 0.013 3.987 17 N -0.637 5.637 18 H 0.269 0.731 19 H -0.016 1.016 20 H -0.016 1.016 21 H 0.409 0.591 22 H 0.070 0.930 23 H 0.118 0.882 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.737 -10.142 0.693 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.356 5.356 11 C 0.286 3.714 12 O -0.476 6.476 13 C -0.100 4.100 14 H 0.150 0.850 15 C -0.163 4.163 16 C -0.116 4.116 17 N -0.264 5.264 18 H 0.078 0.922 19 H 0.002 0.998 20 H 0.002 0.998 21 H 0.245 0.755 22 H 0.089 0.911 23 H 0.136 0.864 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.974 -10.144 1.137 14.987 hybrid contribution 0.707 0.939 -0.648 1.342 sum 11.681 -9.205 0.488 14.880 Atomic orbital electron populations 1.70150 1.08425 1.28609 1.49998 1.26120 0.95772 1.04073 0.93785 0.85113 0.78503 0.76706 0.78613 1.19571 1.21031 1.17675 1.21622 0.94370 0.90405 1.52897 0.89559 1.18533 0.88802 0.84596 0.93819 1.46157 1.11124 1.05350 1.72942 1.21341 0.89704 0.84764 0.75616 1.90627 1.19646 1.85500 1.51854 1.23369 0.94500 0.89731 1.02353 0.85012 1.23176 1.02879 0.96775 0.93519 1.23582 0.94486 0.96563 0.96976 1.67156 1.41954 1.02082 1.15177 0.92242 0.99789 0.99837 0.75532 0.91082 0.86394 0.89126 0.87848 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.96 15 2 C 0.00 0.11 5.46 84.66 0.46 0.57 15 3 Si 0.99 42.42 29.54 68.60 2.03 44.44 15 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.25 -10.01 7.11 99.48 0.71 -9.31 15 7 C -0.56 -30.55 9.28 25.60 0.24 -30.32 15 8 H 0.09 4.24 7.60 -2.91 -0.02 4.21 15 9 C 0.27 15.05 5.43 85.64 0.46 15.51 15 10 N -0.71 -30.67 5.55 -466.80 -2.59 -33.26 15 11 C 0.50 21.18 7.41 87.66 0.65 21.83 15 12 O -0.60 -32.28 16.66 -3.02 -0.05 -32.33 15 13 C 0.01 0.41 4.41 41.48 0.18 0.59 15 14 H 0.13 2.60 8.14 -2.39 -0.02 2.58 15 15 C -0.13 -2.73 8.01 30.98 0.25 -2.49 15 16 C 0.01 0.24 8.61 83.58 0.72 0.96 15 17 N -0.64 -17.42 8.14 -522.48 -4.25 -21.67 15 18 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 19 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 15 20 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 15 21 H 0.41 14.31 8.32 -92.70 -0.77 13.54 15 22 H 0.07 1.94 8.11 -2.39 -0.02 1.92 15 23 H 0.12 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.10 1.13 8.14 -2.39 -0.02 1.11 15 26 H 0.33 7.47 8.91 -89.69 -0.80 6.68 15 Total: -1.00 -76.56 233.20 -2.00 -78.56 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.38 Total: 14.57 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 2.96 Total: 6.66 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -6.56 Total: -111.90 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -76.56 -2.00 -78.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813204.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.776 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds