Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46685 * 2 1 4 4 H 1.08995 * 110.35282 * 304.31602 * 3 2 1 5 5 C 1.54942 * 110.30707 * 182.16703 * 3 2 1 6 6 C 1.55306 * 100.94184 * 204.64060 * 5 3 2 7 7 C 1.54389 * 102.24991 * 34.13346 * 6 5 3 8 8 C 1.52997 * 109.90624 * 219.08328 * 7 6 5 9 9 C 1.50701 * 109.82840 * 98.15848 * 7 6 5 10 10 H 1.08004 * 120.00471 * 7.26999 * 9 7 6 11 11 C 1.37875 * 119.99868 * 187.27116 * 9 7 6 12 12 N 1.31513 * 120.00024 * 197.30862 * 11 9 7 13 13 Si 1.86804 * 120.00101 * 17.59030 * 11 9 7 14 14 H 1.48496 * 109.46989 * 179.71892 * 13 11 9 15 15 H 1.48496 * 109.46937 * 299.72590 * 13 11 9 16 16 H 1.48505 * 109.46755 * 59.72015 * 13 11 9 17 17 O 1.43229 * 107.58938 * 338.64476 * 7 6 5 18 18 H 1.09004 * 109.46599 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47398 * 299.99335 * 1 2 3 20 20 H 1.08989 * 109.47571 * 60.00118 * 1 2 3 21 21 H 1.08994 * 109.47068 * 240.00542 * 2 1 3 22 22 H 1.09000 * 109.47198 * 119.99538 * 2 1 3 23 23 H 1.09005 * 111.12952 * 322.55800 * 5 3 2 24 24 H 1.08996 * 111.12762 * 86.67843 * 5 3 2 25 25 H 1.09001 * 110.84992 * 275.94910 * 6 5 3 26 26 H 1.09002 * 110.84869 * 152.31992 * 6 5 3 27 27 H 1.08999 * 109.47459 * 305.68016 * 8 7 6 28 28 H 1.09003 * 109.46718 * 65.67634 * 8 7 6 29 29 H 1.09000 * 109.47456 * 185.67863 * 8 7 6 30 30 H 0.97000 * 120.00205 * 355.89997 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6231 1.9920 -0.8440 5 6 3.5882 1.4657 -0.0549 6 6 3.8854 2.8478 0.5881 7 6 2.7558 2.9726 1.6331 8 6 2.2428 4.4134 1.6761 9 6 3.2701 2.5726 2.9920 10 1 4.3219 2.3728 3.1341 11 6 2.3978 2.4617 4.0539 12 7 2.8590 2.4521 5.2855 13 14 0.5615 2.3172 3.7432 14 1 -0.1527 2.2046 5.0402 15 1 0.0856 3.5231 3.0190 16 1 0.2919 1.1089 2.9230 17 8 1.6987 2.0920 1.2351 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5137 -0.8899 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 4.0145 0.6566 0.5382 24 1 3.9454 1.4254 -1.0839 25 1 3.8172 3.6435 -0.1537 26 1 4.8626 2.8488 1.0711 27 1 3.0785 5.0917 1.8485 28 1 1.7664 4.6578 0.7266 29 1 1.5181 4.5171 2.4836 30 1 3.8157 2.4630 5.4453 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307068634.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = -64.406889 kcal Electronic energy + Delta-G solvation = -12109.870112 eV Core-core repulsion = 10097.546781 eV Total energy + Delta-G solvation = -2012.323331 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77028 -33.84662 -32.13056 -31.20912 -29.60816 -25.34412 -24.40446 -21.73675 -20.32906 -19.14718 -17.55808 -15.76006 -14.67170 -13.77490 -13.59817 -13.20472 -12.84108 -12.50470 -12.39412 -12.21718 -11.61405 -11.24131 -10.91101 -10.83998 -10.45730 -10.08438 -10.05383 -9.96254 -9.83135 -9.29472 -8.97906 -8.29565 -8.01943 -6.37731 -4.09359 3.64087 3.67180 3.91826 4.68148 4.87235 5.31460 5.40114 5.47619 5.64982 5.71408 5.84717 5.97082 6.06890 6.25764 6.29958 6.39743 6.47857 6.58663 6.60603 6.65276 6.73659 6.82917 6.90304 7.00944 7.44413 8.14118 8.29486 8.45274 8.98142 9.66093 10.99307 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035948 B = 0.021107 C = 0.016486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.709072 B = 1326.238414 C = 1698.032941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.084 3.916 4 H 0.050 0.950 5 C -0.144 4.144 6 C -0.132 4.132 7 C 0.195 3.805 8 C -0.145 4.145 9 C -0.602 4.602 10 H 0.058 0.942 11 C 0.041 3.959 12 N -0.903 5.903 13 Si 1.073 2.927 14 H -0.308 1.308 15 H -0.281 1.281 16 H -0.272 1.272 17 O -0.381 6.381 18 H 0.045 0.955 19 H 0.065 0.935 20 H 0.046 0.954 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -1.843 -10.715 11.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.026 3.974 4 H 0.068 0.932 5 C -0.182 4.182 6 C -0.170 4.170 7 C 0.158 3.842 8 C -0.203 4.203 9 C -0.639 4.639 10 H 0.076 0.924 11 C -0.165 4.165 12 N -0.537 5.537 13 Si 0.905 3.095 14 H -0.237 1.237 15 H -0.208 1.208 16 H -0.198 1.198 17 O -0.302 6.302 18 H 0.064 0.936 19 H 0.084 0.916 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.790 -1.960 -9.845 10.729 hybrid contribution 1.886 0.115 -0.911 2.098 sum -1.904 -1.845 -10.756 11.077 Atomic orbital electron populations 1.21741 0.96042 1.00660 1.02193 1.21640 0.96259 0.96233 1.01669 1.22707 0.93278 0.92736 0.88675 0.93207 1.23146 0.96518 0.98898 0.99633 1.23030 1.00922 0.95307 0.97740 1.20142 0.83192 0.86969 0.93934 1.22288 1.00610 0.97815 0.99572 1.22079 0.95513 1.53417 0.92893 0.92433 1.25922 1.06977 0.91486 0.92105 1.70939 1.16212 1.45525 1.21030 0.83598 0.74208 0.78397 0.73286 1.23725 1.20761 1.19825 1.88294 1.44685 1.59929 1.37317 0.93576 0.91598 0.93487 0.92146 0.91203 0.90815 0.92126 0.93056 0.91279 0.93061 0.95466 0.92321 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.83 37.16 0.37 -2.03 16 2 C -0.12 -2.05 5.68 -26.73 -0.15 -2.20 16 3 C 0.08 1.61 3.43 -25.70 -0.09 1.52 16 4 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.14 -2.65 6.57 -24.48 -0.16 -2.81 16 6 C -0.13 -2.72 6.08 -24.78 -0.15 -2.88 16 7 C 0.20 4.76 0.78 -91.04 -0.07 4.69 16 8 C -0.15 -3.33 8.44 37.16 0.31 -3.02 16 9 C -0.60 -17.29 8.63 -34.44 -0.30 -17.59 16 10 H 0.06 1.76 7.70 -52.48 -0.40 1.35 16 11 C 0.04 1.22 5.30 -17.82 -0.09 1.13 16 12 N -0.90 -28.45 13.70 55.43 0.76 -27.70 16 13 Si 1.07 28.08 24.79 -169.99 -4.21 23.86 16 14 H -0.31 -8.13 7.11 56.52 0.40 -7.73 16 15 H -0.28 -6.98 5.82 56.52 0.33 -6.65 16 16 H -0.27 -6.86 6.15 56.52 0.35 -6.52 16 17 O -0.38 -9.06 6.24 -35.23 -0.22 -9.28 16 18 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 19 H 0.06 1.22 7.22 -51.93 -0.37 0.85 16 20 H 0.05 0.67 8.14 -51.94 -0.42 0.25 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 23 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.94 7.85 -51.93 -0.41 0.54 16 26 H 0.07 1.46 7.58 -51.93 -0.39 1.06 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.43 5.03 -51.93 -0.26 1.17 16 30 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 LS Contribution 235.84 15.07 3.55 3.55 Total: -1.00 -30.87 235.84 -5.38 -36.25 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.92 Total: -3.51 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -0.34 Total: -23.18 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.76 Total: -27.70 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.22 Total: -9.28 kcal Atomic # 14 Polarization: 28.08 SS G_CDS: -4.21 Total: 23.86 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.87 -5.38 -36.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307068634.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.157 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds