Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46685 * 2 1 4 4 H 1.08995 * 110.35282 * 304.31602 * 3 2 1 5 5 C 1.54942 * 110.30707 * 182.16703 * 3 2 1 6 6 C 1.55306 * 100.94184 * 204.64060 * 5 3 2 7 7 C 1.54389 * 102.24991 * 34.13346 * 6 5 3 8 8 C 1.52997 * 109.90624 * 219.08328 * 7 6 5 9 9 C 1.50701 * 109.82840 * 98.15848 * 7 6 5 10 10 H 1.08004 * 120.00471 * 7.26999 * 9 7 6 11 11 C 1.37875 * 119.99868 * 187.27116 * 9 7 6 12 12 N 1.31513 * 120.00024 * 197.30862 * 11 9 7 13 13 Si 1.86804 * 120.00101 * 17.59030 * 11 9 7 14 14 H 1.48496 * 109.46989 * 179.71892 * 13 11 9 15 15 H 1.48496 * 109.46937 * 299.72590 * 13 11 9 16 16 H 1.48505 * 109.46755 * 59.72015 * 13 11 9 17 17 O 1.43229 * 107.58938 * 338.64476 * 7 6 5 18 18 H 1.09004 * 109.46599 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47398 * 299.99335 * 1 2 3 20 20 H 1.08989 * 109.47571 * 60.00118 * 1 2 3 21 21 H 1.08994 * 109.47068 * 240.00542 * 2 1 3 22 22 H 1.09000 * 109.47198 * 119.99538 * 2 1 3 23 23 H 1.09005 * 111.12952 * 322.55800 * 5 3 2 24 24 H 1.08996 * 111.12762 * 86.67843 * 5 3 2 25 25 H 1.09001 * 110.84992 * 275.94910 * 6 5 3 26 26 H 1.09002 * 110.84869 * 152.31992 * 6 5 3 27 27 H 1.08999 * 109.47459 * 305.68016 * 8 7 6 28 28 H 1.09003 * 109.46718 * 65.67634 * 8 7 6 29 29 H 1.09000 * 109.47456 * 185.67863 * 8 7 6 30 30 H 0.97000 * 120.00205 * 355.89997 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6231 1.9920 -0.8440 5 6 3.5882 1.4657 -0.0549 6 6 3.8854 2.8478 0.5881 7 6 2.7558 2.9726 1.6331 8 6 2.2428 4.4134 1.6761 9 6 3.2701 2.5726 2.9920 10 1 4.3219 2.3728 3.1341 11 6 2.3978 2.4617 4.0539 12 7 2.8590 2.4521 5.2855 13 14 0.5615 2.3172 3.7432 14 1 -0.1527 2.2046 5.0402 15 1 0.0856 3.5231 3.0190 16 1 0.2919 1.1089 2.9230 17 8 1.6987 2.0920 1.2351 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5137 -0.8899 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 4.0145 0.6566 0.5382 24 1 3.9454 1.4254 -1.0839 25 1 3.8172 3.6435 -0.1537 26 1 4.8626 2.8488 1.0711 27 1 3.0785 5.0917 1.8485 28 1 1.7664 4.6578 0.7266 29 1 1.5181 4.5171 2.4836 30 1 3.8157 2.4630 5.4453 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307068634.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = -84.627305 kcal Electronic energy + Delta-G solvation = -12110.746935 eV Core-core repulsion = 10097.546781 eV Total energy + Delta-G solvation = -2013.200154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.46060 -35.59358 -34.07281 -32.91013 -31.27269 -27.07520 -26.34364 -23.23795 -21.84750 -21.00671 -19.66791 -17.37818 -16.45725 -15.67264 -15.14484 -14.93629 -14.45617 -14.33603 -14.16362 -13.75588 -13.40966 -12.82280 -12.64267 -12.35098 -12.02475 -11.83490 -11.75412 -11.70899 -11.38572 -11.26816 -10.90283 -10.45218 -9.96923 -8.71033 -6.43662 1.52314 1.60527 1.86425 2.53310 3.00353 3.40413 3.88635 3.96532 4.19868 4.32810 4.47482 4.54306 4.58689 4.77833 4.82195 4.86041 4.97020 5.03664 5.09372 5.13482 5.20424 5.25388 5.47425 5.52679 5.64219 5.96917 6.09381 6.40756 6.84124 7.39403 8.63546 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035948 B = 0.021107 C = 0.016486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.709072 B = 1326.238414 C = 1698.032941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.071 3.929 4 H 0.078 0.922 5 C -0.137 4.137 6 C -0.132 4.132 7 C 0.186 3.814 8 C -0.144 4.144 9 C -0.601 4.601 10 H 0.022 0.978 11 C -0.006 4.006 12 N -0.939 5.939 13 Si 1.109 2.891 14 H -0.317 1.317 15 H -0.259 1.259 16 H -0.262 1.262 17 O -0.402 6.402 18 H 0.065 0.935 19 H 0.034 0.966 20 H 0.068 0.932 21 H 0.097 0.903 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -1.904 -13.763 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.014 3.986 4 H 0.096 0.904 5 C -0.174 4.174 6 C -0.169 4.169 7 C 0.148 3.852 8 C -0.201 4.201 9 C -0.639 4.639 10 H 0.041 0.959 11 C -0.205 4.205 12 N -0.576 5.576 13 Si 0.936 3.064 14 H -0.246 1.246 15 H -0.184 1.184 16 H -0.187 1.187 17 O -0.324 6.324 18 H 0.084 0.916 19 H 0.053 0.947 20 H 0.087 0.913 21 H 0.115 0.885 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.785 -2.020 -12.919 13.924 hybrid contribution 2.284 0.103 -0.031 2.286 sum -2.501 -1.917 -12.950 13.327 Atomic orbital electron populations 1.21732 0.95242 1.01877 1.01672 1.21680 0.97008 0.94945 1.02140 1.23123 0.93944 0.93915 0.87574 0.90434 1.23143 0.96054 0.96698 1.01542 1.22984 0.98573 0.97920 0.97462 1.20080 0.84909 0.87619 0.92587 1.22217 1.00505 0.96902 1.00503 1.22361 0.93838 1.51808 0.95851 0.95940 1.27061 1.10440 0.91200 0.91846 1.71034 1.15323 1.48863 1.22332 0.83142 0.70467 0.79697 0.73064 1.24634 1.18423 1.18735 1.88192 1.44131 1.60256 1.39780 0.91633 0.94706 0.91304 0.88493 0.93918 0.92666 0.87868 0.89992 0.92909 0.92620 0.92233 0.94364 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.83 71.98 0.71 -3.53 16 2 C -0.12 -3.69 5.68 30.60 0.17 -3.52 16 3 C 0.07 2.47 3.43 31.26 0.11 2.58 16 4 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 5 C -0.14 -4.57 6.57 32.05 0.21 -4.35 16 6 C -0.13 -5.10 6.08 31.86 0.19 -4.91 16 7 C 0.19 8.80 0.78 -11.07 -0.01 8.79 16 8 C -0.14 -6.27 8.44 71.98 0.61 -5.67 16 9 C -0.60 -35.18 8.63 25.60 0.22 -34.96 16 10 H 0.02 1.43 7.70 -2.91 -0.02 1.41 16 11 C -0.01 -0.40 5.30 84.65 0.45 0.05 16 12 N -0.94 -61.26 13.70 21.45 0.29 -60.97 16 13 Si 1.11 57.16 24.79 68.60 1.70 58.86 16 14 H -0.32 -16.55 7.11 99.48 0.71 -15.85 16 15 H -0.26 -12.30 5.82 99.48 0.58 -11.72 16 16 H -0.26 -12.89 6.15 99.48 0.61 -12.28 16 17 O -0.40 -18.19 6.24 -148.98 -0.93 -19.12 16 18 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 19 H 0.03 1.20 7.22 -2.39 -0.02 1.18 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.05 2.03 8.06 -2.38 -0.02 2.01 16 24 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.08 2.67 7.85 -2.39 -0.02 2.65 16 26 H 0.05 2.18 7.58 -2.39 -0.02 2.17 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.79 5.03 -2.39 -0.01 1.78 16 30 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 Total: -1.00 -67.98 235.84 4.55 -63.43 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.83 Total: 3.32 kcal Atomic # 6 Polarization: -48.18 SS G_CDS: 2.66 Total: -45.52 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.29 Total: -60.97 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.93 Total: -19.12 kcal Atomic # 14 Polarization: 57.16 SS G_CDS: 1.70 Total: 58.86 kcal Total: -67.98 4.55 -63.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307068634.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.197 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds