Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99316 * 2 1 4 4 O 1.21280 * 120.00376 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99681 * 180.02562 * 3 2 1 6 6 C 1.53495 * 114.20591 * 180.02562 * 5 3 2 7 7 N 1.47066 * 87.98658 * 220.14538 * 6 5 3 8 8 C 1.36937 * 136.06113 * 206.85859 * 7 6 5 9 9 H 1.07995 * 120.00001 * 0.02562 * 8 7 6 10 10 C 1.38817 * 120.00320 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99557 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99975 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47363 * 60.00463 * 12 10 8 14 14 H 1.48506 * 109.46719 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47174 * 300.00290 * 12 10 8 16 16 C 1.47067 * 87.88528 * 27.11900 * 7 6 5 17 17 H 1.09002 * 109.46941 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.47371 * 299.99246 * 1 2 3 19 19 H 1.09001 * 109.47366 * 59.99944 * 1 2 3 20 20 H 0.96999 * 120.00285 * 180.02562 * 2 1 3 21 21 H 1.09006 * 113.28232 * 313.06680 * 5 3 2 22 22 H 1.09005 * 113.46950 * 105.37104 * 6 5 3 23 23 H 1.08994 * 113.52293 * 334.93588 * 6 5 3 24 24 H 0.96999 * 119.99537 * 179.97438 * 11 10 8 25 25 H 1.09007 * 113.46858 * 87.65629 * 16 7 6 26 26 H 1.08993 * 113.47208 * 218.09965 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6457 1.1674 -0.0006 6 6 4.2750 2.5675 0.0001 7 7 5.2782 2.0604 -0.9482 8 6 6.5715 2.3701 -1.2749 9 1 7.0788 3.1762 -0.7658 10 6 7.2308 1.6472 -2.2597 11 7 6.6127 0.6645 -2.8797 12 14 8.9952 2.0693 -2.7047 13 1 9.8587 1.9137 -1.5067 14 1 9.4668 1.1570 -3.7774 15 1 9.0625 3.4731 -3.1844 16 6 4.2791 1.0785 -1.3960 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.9500 -0.8400 -0.0004 21 1 4.0769 0.4836 0.7306 22 1 4.6951 2.8541 0.9642 23 1 3.6275 3.3356 -0.4225 24 1 7.0733 0.1596 -3.5681 25 1 3.6318 1.4494 -2.1908 26 1 4.7024 0.0992 -1.6189 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307073645.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = 19.804976 kcal Electronic energy + Delta-G solvation = -11117.097814 eV Core-core repulsion = 9004.885840 eV Total energy + Delta-G solvation = -2112.211974 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.61664 -37.12154 -34.22991 -32.21456 -28.67109 -26.62862 -24.54404 -23.78484 -20.69931 -19.18923 -17.09998 -16.49395 -15.54158 -15.07178 -14.56599 -14.03199 -13.74859 -12.78527 -12.46652 -12.16132 -11.78606 -11.50531 -11.29536 -10.89142 -10.78005 -10.21590 -9.90054 -9.29570 -9.23222 -8.87610 -8.81414 -6.89818 -5.78720 -3.10794 3.08584 3.40364 3.43891 3.45430 3.59169 4.45900 5.09235 5.24604 5.40752 5.44265 5.59816 5.70804 5.89896 5.94431 6.37455 6.56869 6.65702 6.72642 7.13603 7.27157 7.47232 7.79700 7.94724 8.62663 9.02103 9.68574 10.61379 11.39505 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.097850 B = 0.009391 C = 0.008825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.083786 B = 2980.924138 C = 3172.127351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.529 3.471 4 O -0.548 6.548 5 C -0.174 4.174 6 C 0.140 3.860 7 N -0.611 5.611 8 C -0.217 4.217 9 H 0.083 0.917 10 C -0.009 4.009 11 N -0.923 5.923 12 Si 0.916 3.084 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.285 1.285 16 C 0.177 3.823 17 H 0.070 0.930 18 H 0.054 0.946 19 H 0.055 0.945 20 H 0.403 0.597 21 H 0.110 0.890 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.255 0.745 25 H 0.028 0.972 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 -3.926 5.130 10.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.393 5.393 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.197 4.197 6 C 0.013 3.987 7 N -0.336 5.336 8 C -0.344 4.344 9 H 0.101 0.899 10 C -0.205 4.205 11 N -0.570 5.570 12 Si 0.746 3.254 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.211 1.211 16 C 0.051 3.949 17 H 0.089 0.911 18 H 0.073 0.927 19 H 0.074 0.926 20 H 0.236 0.764 21 H 0.128 0.872 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.030 -3.185 4.941 9.952 hybrid contribution 0.997 -0.243 -0.392 1.099 sum -7.033 -3.428 4.549 9.050 Atomic orbital electron populations 1.21458 0.80663 1.01578 1.01908 1.45923 1.07180 1.09249 1.76930 1.20916 0.90321 0.83027 0.74070 1.90630 1.70658 1.31588 1.49593 1.23667 0.88937 1.02817 1.04288 1.22239 0.89765 0.92378 0.94276 1.45541 1.07925 1.37806 1.42341 1.18926 0.84928 1.13942 1.16605 0.89898 1.24807 0.98697 0.98432 0.98577 1.69797 1.36517 1.22949 1.27782 0.86138 0.83895 0.77545 0.77824 1.20990 1.21524 1.21114 1.21921 0.87898 0.96566 0.88532 0.91145 0.92704 0.92586 0.76385 0.87236 0.93807 0.93309 0.93523 0.95467 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.70 59.85 0.64 1.64 15 2 N -0.74 -10.20 5.71 -67.08 -0.38 -10.58 15 3 C 0.53 9.64 7.41 -10.98 -0.08 9.56 15 4 O -0.55 -11.76 15.95 5.56 0.09 -11.67 15 5 C -0.17 -3.41 4.49 -91.26 -0.41 -3.82 15 6 C 0.14 3.14 8.03 -8.51 -0.07 3.07 15 7 N -0.61 -16.27 3.78 -184.77 -0.70 -16.96 15 8 C -0.22 -6.20 10.75 -15.06 -0.16 -6.37 15 9 H 0.08 2.27 7.83 -52.49 -0.41 1.86 15 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 15 11 N -0.92 -27.43 11.51 55.49 0.64 -26.79 15 12 Si 0.92 22.20 29.55 -169.99 -5.02 17.17 15 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 16 C 0.18 4.24 6.98 -8.51 -0.06 4.18 15 17 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 18 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.40 4.48 8.83 -40.82 -0.36 4.12 15 21 H 0.11 1.93 8.14 -51.93 -0.42 1.51 15 22 H 0.04 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.05 1.14 7.46 -51.93 -0.39 0.76 15 24 H 0.25 7.31 8.31 -40.82 -0.34 6.97 15 25 H 0.03 0.69 8.10 -51.93 -0.42 0.27 15 26 H 0.08 1.98 7.12 -51.93 -0.37 1.61 15 LS Contribution 230.03 15.07 3.47 3.47 Total: -1.00 -33.27 230.03 -5.35 -38.61 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.20 Total: -1.16 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.24 Total: 7.92 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.44 Total: -54.34 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -33.27 -5.35 -38.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307073645.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.418 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds