Wall clock time and date at job start Mon Mar 30 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.89584 * 2 1 4 4 C 1.54380 * 109.83243 * 120.93390 * 2 1 3 5 5 C 1.55309 * 102.24972 * 98.15511 * 4 2 1 6 6 C 1.54941 * 100.94186 * 34.13480 * 5 4 2 7 7 C 1.52998 * 110.31238 * 82.56632 * 6 5 4 8 8 C 1.50694 * 110.30865 * 204.63889 * 6 5 4 9 9 H 1.08000 * 120.00006 * 332.80518 * 8 6 5 10 10 C 1.37878 * 120.00486 * 152.80359 * 8 6 5 11 11 N 1.31511 * 120.00514 * 183.84705 * 10 8 6 12 12 Si 1.86799 * 119.99597 * 3.85368 * 10 8 6 13 13 H 1.48501 * 109.47144 * 274.98027 * 12 10 8 14 14 H 1.48501 * 109.47288 * 34.98089 * 12 10 8 15 15 H 1.48503 * 109.47257 * 154.98552 * 12 10 8 16 16 O 1.43382 * 109.88507 * 239.13147 * 2 1 3 17 17 H 1.09002 * 109.46720 * 299.06334 * 1 2 3 18 18 H 1.08995 * 109.47226 * 59.06284 * 1 2 3 19 19 H 1.08995 * 109.46964 * 179.07000 * 1 2 3 20 20 H 1.08995 * 109.47065 * 180.93636 * 3 2 1 21 21 H 1.09000 * 109.47239 * 300.93717 * 3 2 1 22 22 H 1.09006 * 109.47139 * 60.93515 * 3 2 1 23 23 H 1.09000 * 110.84537 * 339.96847 * 4 2 1 24 24 H 1.08995 * 111.02182 * 216.42379 * 4 2 1 25 25 H 1.08990 * 111.12550 * 276.21297 * 5 4 2 26 26 H 1.09001 * 111.15438 * 152.06522 * 5 4 2 27 27 H 1.08998 * 109.47645 * 176.24452 * 7 6 5 28 28 H 1.08995 * 109.47270 * 296.24485 * 7 6 5 29 29 H 1.09002 * 109.47098 * 56.24181 * 7 6 5 30 30 H 0.97001 * 119.99891 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0538 -0.7465 1.2457 5 6 2.3681 -2.1570 0.6766 6 6 2.8407 -1.7981 -0.7546 7 6 4.3141 -1.3860 -0.7398 8 6 2.6349 -2.9678 -1.6821 9 1 2.6404 -3.9745 -1.2911 10 6 2.4396 -2.7530 -3.0300 11 7 2.1848 -3.7672 -3.8275 12 14 2.5372 -1.0212 -3.7234 13 1 1.2202 -0.3522 -3.5714 14 1 3.5716 -0.2508 -2.9874 15 1 2.8973 -1.0838 -5.1628 16 8 2.0177 -0.6918 -1.1573 17 1 -0.3633 0.4992 0.8983 18 1 -0.3633 0.5283 -0.8814 19 1 -0.3633 -1.0275 -0.0167 20 1 3.1405 1.4306 -0.0168 21 1 1.6776 1.9601 -0.8815 22 1 1.7049 1.9502 0.8983 23 1 1.2852 -0.8017 2.0165 24 1 2.9566 -0.2747 1.6334 25 1 1.4732 -2.7785 0.6505 26 1 3.1635 -2.6414 1.2430 27 1 4.6501 -1.2012 -1.7601 28 1 4.4315 -0.4780 -0.1485 29 1 4.9105 -2.1855 -0.3001 30 1 2.0471 -3.6159 -4.7757 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307145328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:26 Heat of formation + Delta-G solvation = -59.089471 kcal Electronic energy + Delta-G solvation = -12267.912475 eV Core-core repulsion = 10255.819725 eV Total energy + Delta-G solvation = -2012.092750 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.17823 -33.62991 -31.77083 -31.36102 -28.20554 -26.87337 -25.19863 -22.79877 -19.75500 -19.18103 -16.61911 -15.30061 -14.80978 -14.12546 -13.53634 -13.09845 -12.70523 -12.46676 -12.10193 -11.96540 -11.82660 -11.44878 -11.27598 -11.10164 -10.96804 -10.25967 -10.04432 -10.01167 -9.89615 -9.33935 -8.90164 -8.58227 -8.18582 -5.99497 -4.07790 3.49456 3.64216 3.76302 4.58380 4.85617 5.32339 5.35383 5.36822 5.61646 5.75214 5.91106 5.97337 6.04225 6.20419 6.24354 6.30555 6.39095 6.50311 6.53721 6.62036 6.71280 6.84308 6.88851 6.95573 7.47754 7.74621 8.30466 8.55016 8.97058 9.65738 11.10457 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.043428 B = 0.019824 C = 0.017694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.587136 B = 1412.103377 C = 1582.116926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.098 3.902 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.131 4.131 6 C 0.198 3.802 7 C -0.151 4.151 8 C -0.519 4.519 9 H 0.080 0.920 10 C 0.081 3.919 11 N -0.901 5.901 12 Si 0.919 3.081 13 H -0.280 1.280 14 H -0.260 1.260 15 H -0.316 1.316 16 O -0.369 6.369 17 H 0.053 0.947 18 H 0.054 0.946 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 8.124 8.407 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.058 3.942 3 C -0.209 4.209 4 C -0.183 4.183 5 C -0.169 4.169 6 C 0.160 3.840 7 C -0.209 4.209 8 C -0.556 4.556 9 H 0.098 0.902 10 C -0.122 4.122 11 N -0.538 5.538 12 Si 0.752 3.248 13 H -0.207 1.207 14 H -0.185 1.185 15 H -0.246 1.246 16 O -0.290 6.290 17 H 0.072 0.928 18 H 0.073 0.927 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.425 8.113 8.036 11.427 hybrid contribution 0.022 0.782 -0.250 0.821 sum -0.403 8.895 7.786 11.828 Atomic orbital electron populations 1.22030 0.95260 1.02442 1.00794 1.21926 0.93481 0.91876 0.86885 1.22138 1.01312 0.96405 1.01089 1.23140 1.00516 0.97406 0.97197 1.23191 1.01268 0.95129 0.97314 1.20351 0.86874 0.84828 0.91898 1.22393 0.98821 0.98557 1.01108 1.20863 1.51420 0.91690 0.91607 0.90247 1.24988 0.92656 0.97656 0.96884 1.69953 1.47611 1.31375 1.04837 0.86114 0.79701 0.84402 0.74545 1.20680 1.18540 1.24598 1.88194 1.67696 1.44835 1.28319 0.92816 0.92678 0.91912 0.92523 0.92668 0.92611 0.91522 0.91590 0.90991 0.91796 0.92600 0.95483 0.93018 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.73 37.16 0.32 -2.22 16 2 C 0.10 1.85 1.27 -89.89 -0.11 1.74 16 3 C -0.15 -2.48 8.75 37.16 0.33 -2.16 16 4 C -0.14 -2.46 5.71 -24.78 -0.14 -2.60 16 5 C -0.13 -2.64 6.04 -24.48 -0.15 -2.79 16 6 C 0.20 4.75 0.67 -90.75 -0.06 4.69 16 7 C -0.15 -3.32 8.40 37.16 0.31 -3.01 16 8 C -0.52 -14.90 8.82 -34.44 -0.30 -15.21 16 9 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 10 C 0.08 2.44 5.47 -17.82 -0.10 2.35 16 11 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 12 Si 0.92 24.58 24.39 -169.99 -4.15 20.44 16 13 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 14 H -0.26 -6.67 5.47 56.52 0.31 -6.36 16 15 H -0.32 -8.43 7.11 56.52 0.40 -8.03 16 16 O -0.37 -8.85 5.71 -35.23 -0.20 -9.05 16 17 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 18 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 19 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 20 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 24 H 0.07 1.03 7.63 -51.93 -0.40 0.63 16 25 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 26 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 27 H 0.06 1.31 5.88 -51.93 -0.31 1.00 16 28 H 0.03 0.52 7.32 -51.93 -0.38 0.14 16 29 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 235.31 15.07 3.55 3.55 Total: -1.00 -31.35 235.31 -4.84 -36.19 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.91 Total: -4.35 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 0.10 Total: -19.20 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.77 Total: -27.57 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.20 Total: -9.05 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.15 Total: 20.44 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.35 -4.84 -36.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307145328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.896 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds