Wall clock time and date at job start Mon Mar 30 2020 02:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.89584 * 2 1 4 4 C 1.54380 * 109.83243 * 120.93390 * 2 1 3 5 5 C 1.55309 * 102.24972 * 98.15511 * 4 2 1 6 6 C 1.54941 * 100.94186 * 34.13480 * 5 4 2 7 7 C 1.52998 * 110.31238 * 82.56632 * 6 5 4 8 8 C 1.50694 * 110.30865 * 204.63889 * 6 5 4 9 9 H 1.08000 * 120.00006 * 332.80518 * 8 6 5 10 10 C 1.37878 * 120.00486 * 152.80359 * 8 6 5 11 11 N 1.31511 * 120.00514 * 183.84705 * 10 8 6 12 12 Si 1.86799 * 119.99597 * 3.85368 * 10 8 6 13 13 H 1.48501 * 109.47144 * 274.98027 * 12 10 8 14 14 H 1.48501 * 109.47288 * 34.98089 * 12 10 8 15 15 H 1.48503 * 109.47257 * 154.98552 * 12 10 8 16 16 O 1.43382 * 109.88507 * 239.13147 * 2 1 3 17 17 H 1.09002 * 109.46720 * 299.06334 * 1 2 3 18 18 H 1.08995 * 109.47226 * 59.06284 * 1 2 3 19 19 H 1.08995 * 109.46964 * 179.07000 * 1 2 3 20 20 H 1.08995 * 109.47065 * 180.93636 * 3 2 1 21 21 H 1.09000 * 109.47239 * 300.93717 * 3 2 1 22 22 H 1.09006 * 109.47139 * 60.93515 * 3 2 1 23 23 H 1.09000 * 110.84537 * 339.96847 * 4 2 1 24 24 H 1.08995 * 111.02182 * 216.42379 * 4 2 1 25 25 H 1.08990 * 111.12550 * 276.21297 * 5 4 2 26 26 H 1.09001 * 111.15438 * 152.06522 * 5 4 2 27 27 H 1.08998 * 109.47645 * 176.24452 * 7 6 5 28 28 H 1.08995 * 109.47270 * 296.24485 * 7 6 5 29 29 H 1.09002 * 109.47098 * 56.24181 * 7 6 5 30 30 H 0.97001 * 119.99891 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0538 -0.7465 1.2457 5 6 2.3681 -2.1570 0.6766 6 6 2.8407 -1.7981 -0.7546 7 6 4.3141 -1.3860 -0.7398 8 6 2.6349 -2.9678 -1.6821 9 1 2.6404 -3.9745 -1.2911 10 6 2.4396 -2.7530 -3.0300 11 7 2.1848 -3.7672 -3.8275 12 14 2.5372 -1.0212 -3.7234 13 1 1.2202 -0.3522 -3.5714 14 1 3.5716 -0.2508 -2.9874 15 1 2.8973 -1.0838 -5.1628 16 8 2.0177 -0.6918 -1.1573 17 1 -0.3633 0.4992 0.8983 18 1 -0.3633 0.5283 -0.8814 19 1 -0.3633 -1.0275 -0.0167 20 1 3.1405 1.4306 -0.0168 21 1 1.6776 1.9601 -0.8815 22 1 1.7049 1.9502 0.8983 23 1 1.2852 -0.8017 2.0165 24 1 2.9566 -0.2747 1.6334 25 1 1.4732 -2.7785 0.6505 26 1 3.1635 -2.6414 1.2430 27 1 4.6501 -1.2012 -1.7601 28 1 4.4315 -0.4780 -0.1485 29 1 4.9105 -2.1855 -0.3001 30 1 2.0471 -3.6159 -4.7757 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307145328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:25 Heat of formation + Delta-G solvation = -79.961162 kcal Electronic energy + Delta-G solvation = -12268.817540 eV Core-core repulsion = 10255.819725 eV Total energy + Delta-G solvation = -2012.997815 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.79256 -35.44097 -33.71642 -33.08045 -29.79433 -28.22954 -27.20303 -24.39848 -21.40835 -20.85593 -18.71776 -17.08394 -16.45031 -15.85083 -15.19283 -14.75904 -14.52172 -14.24657 -13.70467 -13.49991 -13.40981 -13.00495 -12.81223 -12.66631 -12.44673 -12.22763 -12.09358 -11.61479 -11.41069 -11.09802 -10.76903 -10.76479 -10.03281 -8.30572 -6.39700 1.37618 1.50523 1.61315 2.44791 3.00652 3.35585 3.87523 4.04970 4.17633 4.36705 4.48600 4.53727 4.73966 4.78036 4.79844 4.91173 4.91700 5.03360 5.04412 5.11551 5.26622 5.29057 5.38263 5.53960 5.66333 5.76036 6.23498 6.53107 6.81889 7.38272 8.83446 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.043428 B = 0.019824 C = 0.017694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.587136 B = 1412.103377 C = 1582.116926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 C -0.147 4.147 4 C -0.129 4.129 5 C -0.131 4.131 6 C 0.188 3.812 7 C -0.146 4.146 8 C -0.519 4.519 9 H 0.043 0.957 10 C 0.027 3.973 11 N -0.948 5.948 12 Si 0.979 3.021 13 H -0.288 1.288 14 H -0.242 1.242 15 H -0.321 1.321 16 O -0.400 6.400 17 H 0.093 0.907 18 H 0.044 0.956 19 H 0.041 0.959 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 10.545 10.573 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.039 3.961 3 C -0.204 4.204 4 C -0.167 4.167 5 C -0.169 4.169 6 C 0.150 3.850 7 C -0.203 4.203 8 C -0.557 4.557 9 H 0.061 0.939 10 C -0.171 4.171 11 N -0.588 5.588 12 Si 0.811 3.189 13 H -0.216 1.216 14 H -0.166 1.166 15 H -0.251 1.251 16 O -0.323 6.323 17 H 0.112 0.888 18 H 0.063 0.937 19 H 0.060 0.940 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.111 0.889 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.084 10.545 10.229 14.692 hybrid contribution -0.133 -0.028 -0.841 0.852 sum -0.217 10.517 9.389 14.099 Atomic orbital electron populations 1.22049 0.94454 1.01539 1.02349 1.22411 0.94367 0.93198 0.86119 1.22108 1.01227 0.94505 1.02607 1.23115 1.02398 0.94356 0.96804 1.23092 1.00926 0.97364 0.95525 1.20319 0.88313 0.83709 0.92623 1.22270 0.97126 1.00382 1.00562 1.21251 1.49530 0.92430 0.92455 0.93854 1.25761 0.92973 1.00843 0.97552 1.70078 1.50237 1.33372 1.05159 0.85173 0.79582 0.80549 0.73600 1.21554 1.16619 1.25138 1.88056 1.68053 1.44888 1.31273 0.88797 0.93712 0.93955 0.92560 0.93475 0.88931 0.88649 0.89278 0.92900 0.90138 0.94643 0.92337 0.92029 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 8.73 71.98 0.63 -4.00 16 2 C 0.08 2.66 1.27 -10.32 -0.01 2.65 16 3 C -0.15 -4.12 8.75 71.98 0.63 -3.49 16 4 C -0.13 -3.79 5.71 31.86 0.18 -3.61 16 5 C -0.13 -4.99 6.04 32.05 0.19 -4.80 16 6 C 0.19 8.78 0.67 -10.88 -0.01 8.77 16 7 C -0.15 -6.04 8.40 71.98 0.60 -5.44 16 8 C -0.52 -30.44 8.82 25.60 0.23 -30.22 16 9 H 0.04 2.77 8.06 -2.91 -0.02 2.74 16 10 C 0.03 1.64 5.47 84.66 0.46 2.11 16 11 N -0.95 -61.82 13.96 21.45 0.30 -61.52 16 12 Si 0.98 51.63 24.39 68.60 1.67 53.31 16 13 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 14 H -0.24 -11.86 5.47 99.48 0.54 -11.32 16 15 H -0.32 -16.85 7.11 99.48 0.71 -16.14 16 16 O -0.40 -18.46 5.71 -148.98 -0.85 -19.32 16 17 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 19 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.06 1.57 7.79 -2.39 -0.02 1.56 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 24 H 0.09 2.24 7.63 -2.39 -0.02 2.22 16 25 H 0.05 2.17 8.05 -2.39 -0.02 2.15 16 26 H 0.08 2.75 8.03 -2.39 -0.02 2.73 16 27 H 0.03 1.58 5.88 -2.39 -0.01 1.57 16 28 H 0.06 2.04 7.32 -2.39 -0.02 2.02 16 29 H 0.06 2.37 8.13 -2.39 -0.02 2.36 16 30 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -69.25 235.31 4.95 -64.30 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 0.92 Total: 1.26 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 2.91 Total: -38.03 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.30 Total: -61.52 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.85 Total: -19.32 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 1.67 Total: 53.31 kcal Total: -69.25 4.95 -64.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307145328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.662 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds