Wall clock time and date at job start Mon Mar 30 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47455 * 2 1 4 4 C 1.53004 * 109.47183 * 119.99882 * 2 1 3 5 5 H 1.08996 * 110.55200 * 302.88198 * 4 2 1 6 6 C 1.54991 * 110.61831 * 179.97438 * 4 2 1 7 7 C 1.54813 * 102.09540 * 204.32276 * 6 4 2 8 8 C 1.54104 * 104.18460 * 20.87950 * 7 6 4 9 9 H 1.08997 * 109.87584 * 242.45902 * 8 7 6 10 10 C 1.50695 * 109.87396 * 121.45818 * 8 7 6 11 11 H 1.08004 * 120.00546 * 0.27648 * 10 8 7 12 12 C 1.37885 * 119.99721 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 90.00142 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99892 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99603 * 14 12 10 18 18 O 1.43742 * 107.29477 * 2.03587 * 8 7 6 19 19 H 1.09002 * 109.46970 * 299.99880 * 1 2 3 20 20 H 1.09001 * 109.47565 * 59.99632 * 1 2 3 21 21 H 1.08997 * 109.47007 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47159 * 239.99702 * 2 1 3 23 23 H 1.08998 * 109.47314 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47035 * 300.00692 * 3 2 1 25 25 H 1.09002 * 109.46934 * 60.00097 * 3 2 1 26 26 H 1.09000 * 110.90824 * 86.12207 * 6 4 2 27 27 H 1.08998 * 110.93932 * 322.53247 * 6 4 2 28 28 H 1.09004 * 110.48232 * 262.20644 * 7 6 4 29 29 H 1.08993 * 110.49062 * 139.55933 * 7 6 4 30 30 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6451 -0.2517 2.1502 6 6 3.5896 -0.7373 1.2758 7 6 3.8861 -1.9700 2.1642 8 6 2.5925 -2.8048 2.0957 9 1 2.1510 -2.8863 3.0889 10 6 2.8972 -4.1785 1.5562 11 1 3.9103 -4.4418 1.2902 12 6 1.8835 -5.1014 1.4080 13 7 2.1494 -6.3000 0.9367 14 14 0.1326 -4.6485 1.8752 15 1 -0.5600 -4.0684 0.6967 16 1 -0.5902 -5.8655 2.3246 17 1 0.1559 -3.6519 2.9759 18 8 1.6893 -2.1214 1.2106 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.9803 0.1730 1.7306 27 1 3.9949 -0.8739 0.2733 28 1 4.0870 -1.6614 3.1901 29 1 4.7270 -2.5358 1.7633 30 1 1.4362 -6.9491 0.8321 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307407437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:18 Heat of formation + Delta-G solvation = -86.264033 kcal Electronic energy + Delta-G solvation = -11792.064858 eV Core-core repulsion = 9778.793730 eV Total energy + Delta-G solvation = -2013.271128 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.32041 -36.19912 -34.54644 -32.75687 -30.28354 -27.92067 -26.27027 -23.39384 -21.74416 -20.87147 -19.22822 -17.31070 -16.68433 -16.15653 -15.57729 -14.95163 -14.73873 -14.20844 -13.92613 -13.71724 -13.19347 -12.96831 -12.83616 -12.50444 -12.24572 -11.88447 -11.78895 -11.76666 -11.38334 -11.27045 -11.17427 -10.84614 -10.16055 -8.37658 -6.49280 1.31744 1.39912 1.49236 2.34913 2.85238 3.45071 3.80749 3.97139 4.17811 4.21854 4.37678 4.42957 4.53831 4.69311 4.83973 4.92196 4.98309 5.02298 5.05856 5.10580 5.25395 5.27767 5.37464 5.49198 5.52824 5.57256 6.18153 6.42938 6.69806 7.26498 8.76888 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.046032 B = 0.015184 C = 0.012538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.127234 B = 1843.603029 C = 2232.595902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.135 4.135 4 C 0.064 3.936 5 H 0.066 0.934 6 C -0.133 4.133 7 C -0.137 4.137 8 C 0.161 3.839 9 H 0.023 0.977 10 C -0.528 4.528 11 H 0.042 0.958 12 C 0.026 3.974 13 N -0.940 5.940 14 Si 0.964 3.036 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.255 1.255 18 O -0.406 6.406 19 H 0.062 0.938 20 H 0.070 0.930 21 H 0.028 0.972 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 15.781 0.766 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.192 4.192 4 C 0.007 3.993 5 H 0.084 0.916 6 C -0.170 4.170 7 C -0.174 4.174 8 C 0.105 3.895 9 H 0.041 0.959 10 C -0.565 4.565 11 H 0.061 0.939 12 C -0.173 4.173 13 N -0.580 5.580 14 Si 0.790 3.210 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.179 1.179 18 O -0.327 6.327 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.961 15.529 0.610 15.664 hybrid contribution -0.460 -0.670 0.098 0.818 sum -2.420 14.859 0.708 15.072 Atomic orbital electron populations 1.21759 0.95060 1.00691 1.02421 1.21157 0.96357 0.97147 0.96339 1.21749 1.01526 0.93038 1.02859 1.23357 0.94302 0.83501 0.98146 0.91608 1.23059 0.95721 0.98081 1.00157 1.22827 0.97840 0.96291 1.00487 1.20689 0.87963 0.91083 0.89732 0.95894 1.21467 0.94953 0.95774 1.44332 0.93939 1.25912 1.03738 0.94248 0.93451 1.70052 1.34793 1.06365 1.46759 0.85420 0.79189 0.76795 0.79580 1.20380 1.21685 1.17920 1.88903 1.57523 1.18781 1.67536 0.91876 0.91063 0.95292 0.92436 0.91777 0.91150 0.91576 0.87901 0.91659 0.90150 0.92502 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.11 71.98 0.66 -3.43 16 2 C -0.09 -2.71 2.72 -10.79 -0.03 -2.74 16 3 C -0.13 -2.78 8.97 71.98 0.65 -2.14 16 4 C 0.06 2.27 2.84 31.28 0.09 2.35 16 5 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 6 C -0.13 -4.28 5.46 31.89 0.17 -4.11 16 7 C -0.14 -5.39 6.63 31.59 0.21 -5.18 16 8 C 0.16 8.01 2.70 30.22 0.08 8.09 16 9 H 0.02 1.17 7.14 -2.39 -0.02 1.15 16 10 C -0.53 -31.81 9.36 25.60 0.24 -31.57 16 11 H 0.04 2.77 7.58 -2.91 -0.02 2.75 16 12 C 0.03 1.59 5.47 84.66 0.46 2.05 16 13 N -0.94 -60.68 13.96 21.45 0.30 -60.38 16 14 Si 0.96 49.61 26.32 68.60 1.81 51.42 16 15 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 16 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 17 H -0.26 -12.48 6.51 99.48 0.65 -11.83 16 18 O -0.41 -19.48 8.47 -148.98 -1.26 -20.75 16 19 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.03 1.01 7.91 -2.39 -0.02 0.99 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.06 1.24 7.20 -2.39 -0.02 1.22 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 2.49 8.04 -2.39 -0.02 2.47 16 27 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 29 H 0.06 2.39 7.40 -2.39 -0.02 2.37 16 30 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -69.01 241.36 4.40 -64.61 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 1.02 Total: 1.76 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 2.53 Total: -36.67 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.30 Total: -60.38 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.26 Total: -20.75 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.81 Total: 51.42 kcal Total: -69.01 4.40 -64.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.650 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds