Wall clock time and date at job start Mon Mar 30 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47334 * 2 1 4 4 C 1.52997 * 109.47237 * 120.00568 * 2 1 3 5 5 H 1.08999 * 110.33077 * 57.74672 * 4 2 1 6 6 C 1.54477 * 110.37308 * 180.02562 * 4 2 1 7 7 C 1.54507 * 104.06510 * 142.80822 * 6 4 2 8 8 C 1.54483 * 104.06211 * 359.97438 * 7 6 4 9 9 H 1.09002 * 110.37322 * 94.85326 * 8 7 6 10 10 C 1.50699 * 110.37332 * 217.08025 * 8 7 6 11 11 H 1.08001 * 120.00025 * 358.44931 * 10 8 7 12 12 C 1.37876 * 119.99873 * 178.44761 * 10 8 7 13 13 N 1.31512 * 120.00296 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99978 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47194 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47260 * 120.00059 * 14 12 10 17 17 H 1.48503 * 109.47322 * 240.00189 * 14 12 10 18 18 O 1.44428 * 104.89902 * 335.96812 * 8 7 6 19 19 H 1.09000 * 109.47433 * 299.99886 * 1 2 3 20 20 H 1.09008 * 109.47336 * 59.99895 * 1 2 3 21 21 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.47467 * 240.00722 * 2 1 3 23 23 H 1.09003 * 109.47376 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47435 * 300.00239 * 3 2 1 25 25 H 1.09006 * 109.46874 * 60.00394 * 3 2 1 26 26 H 1.09000 * 110.51486 * 24.16264 * 6 4 2 27 27 H 1.09000 * 110.62726 * 261.50882 * 6 4 2 28 28 H 1.09005 * 110.51421 * 241.35469 * 7 6 4 29 29 H 1.09004 * 110.63217 * 118.69765 * 7 6 4 30 30 H 0.97002 * 119.99918 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6519 -1.7394 1.2835 6 6 3.5845 -0.7329 1.2705 7 6 3.9408 -0.5484 2.7626 8 6 2.5693 -0.4465 3.4661 9 1 2.2624 -1.4224 3.8424 10 6 2.6303 0.5533 4.5921 11 1 3.5585 1.0577 4.8167 12 6 1.5011 0.8241 5.3354 13 7 0.3709 0.2095 5.0623 14 14 1.5768 2.0628 6.7316 15 1 2.9535 2.6101 6.8336 16 1 0.6234 3.1694 6.4638 17 1 1.2136 1.3943 8.0069 18 8 1.6586 0.0060 2.4406 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5137 -0.8901 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.9809 0.0919 0.6784 27 1 3.9665 -1.6848 0.9015 28 1 4.5133 0.3677 2.9081 29 1 4.4978 -1.4088 3.1337 30 1 -0.4236 0.4003 5.5850 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307407440.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:20 Heat of formation + Delta-G solvation = -66.697806 kcal Electronic energy + Delta-G solvation = -11826.979090 eV Core-core repulsion = 9814.556417 eV Total energy + Delta-G solvation = -2012.422673 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.39599 -34.31834 -32.25727 -30.75291 -27.88598 -26.56497 -24.54891 -21.79070 -19.92844 -18.94200 -16.66345 -15.12953 -14.71699 -14.28174 -14.09633 -13.38026 -12.65080 -12.54588 -12.23819 -11.69865 -11.51218 -11.10750 -10.90729 -10.61641 -10.54351 -10.43050 -10.13733 -9.93023 -9.68289 -9.42711 -9.01256 -8.55734 -7.97519 -5.97741 -4.09642 3.31840 3.39550 3.43382 4.45000 5.07148 5.35872 5.45829 5.51136 5.71978 5.84317 5.99498 6.00755 6.17049 6.26953 6.35674 6.44034 6.54575 6.55477 6.76476 6.77606 6.84623 6.88585 7.01111 7.11998 7.57370 7.92560 8.29109 8.61589 9.02673 9.60470 11.10242 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047748 B = 0.013291 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.267101 B = 2106.258934 C = 2344.556246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.142 4.142 4 C 0.067 3.933 5 H 0.045 0.955 6 C -0.154 4.154 7 C -0.146 4.146 8 C 0.205 3.795 9 H 0.023 0.977 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.076 3.924 13 N -0.864 5.864 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 O -0.342 6.342 19 H 0.068 0.932 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -0.670 -7.654 8.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.199 4.199 4 C 0.008 3.992 5 H 0.063 0.937 6 C -0.191 4.191 7 C -0.184 4.184 8 C 0.149 3.851 9 H 0.040 0.960 10 C -0.565 4.565 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.501 5.501 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 O -0.261 6.261 19 H 0.088 0.912 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.333 -0.532 -7.575 7.944 hybrid contribution 0.147 0.416 0.699 0.827 sum 2.480 -0.117 -6.876 7.311 Atomic orbital electron populations 1.21735 0.95249 1.01158 1.01656 1.21066 0.96102 0.96742 0.96377 1.21782 1.00438 0.96070 1.01573 1.22812 0.92400 0.94939 0.89050 0.93688 1.23038 0.97423 1.00523 0.98164 1.23021 1.01096 1.00482 0.93803 1.20479 0.82547 0.95635 0.86454 0.95982 1.21082 0.96354 1.25950 1.13106 0.91909 1.25080 0.95424 0.95597 0.96836 1.70050 1.00159 1.40903 1.38978 0.86575 0.78211 0.81428 0.81971 1.19655 1.20872 1.20942 1.89528 1.56757 1.62829 1.17026 0.91246 0.93905 0.93474 0.91995 0.93068 0.94107 0.91100 0.91545 0.92776 0.91984 0.93036 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.10 37.15 0.34 -2.08 16 2 C -0.08 -1.48 2.84 -90.62 -0.26 -1.73 16 3 C -0.14 -2.44 8.77 37.16 0.33 -2.11 16 4 C 0.07 1.39 3.00 -25.96 -0.08 1.31 16 5 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.15 -2.89 6.46 -25.17 -0.16 -3.05 16 7 C -0.15 -3.16 6.62 -25.16 -0.17 -3.33 16 8 C 0.20 5.43 3.08 -27.11 -0.08 5.35 16 9 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 10 C -0.53 -15.13 8.78 -34.44 -0.30 -15.43 16 11 H 0.06 1.75 7.58 -52.49 -0.40 1.36 16 12 C 0.08 2.19 5.42 -17.82 -0.10 2.10 16 13 N -0.86 -26.06 13.00 55.43 0.72 -25.34 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 O -0.34 -8.96 9.44 -35.23 -0.33 -9.29 16 19 H 0.07 1.39 7.85 -51.93 -0.41 0.99 16 20 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 23 H 0.05 0.84 6.11 -51.93 -0.32 0.52 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.43 7.61 -51.93 -0.40 1.04 16 26 H 0.07 1.16 5.79 -51.93 -0.30 0.86 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.35 7.72 -51.93 -0.40 0.95 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 243.46 15.07 3.67 3.67 Total: -1.00 -30.25 243.46 -6.18 -36.43 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.74 Total: -3.16 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -0.48 Total: -18.98 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.72 Total: -25.34 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.33 Total: -9.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.25 -6.18 -36.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407440.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.269 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds