Wall clock time and date at job start Mon Mar 30 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47334 * 2 1 4 4 C 1.52997 * 109.47237 * 120.00568 * 2 1 3 5 5 H 1.08999 * 110.33077 * 57.74672 * 4 2 1 6 6 C 1.54477 * 110.37308 * 180.02562 * 4 2 1 7 7 C 1.54507 * 104.06510 * 142.80822 * 6 4 2 8 8 C 1.54483 * 104.06211 * 359.97438 * 7 6 4 9 9 H 1.09002 * 110.37322 * 94.85326 * 8 7 6 10 10 C 1.50699 * 110.37332 * 217.08025 * 8 7 6 11 11 H 1.08001 * 120.00025 * 358.44931 * 10 8 7 12 12 C 1.37876 * 119.99873 * 178.44761 * 10 8 7 13 13 N 1.31512 * 120.00296 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99978 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47194 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47260 * 120.00059 * 14 12 10 17 17 H 1.48503 * 109.47322 * 240.00189 * 14 12 10 18 18 O 1.44428 * 104.89902 * 335.96812 * 8 7 6 19 19 H 1.09000 * 109.47433 * 299.99886 * 1 2 3 20 20 H 1.09008 * 109.47336 * 59.99895 * 1 2 3 21 21 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.47467 * 240.00722 * 2 1 3 23 23 H 1.09003 * 109.47376 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47435 * 300.00239 * 3 2 1 25 25 H 1.09006 * 109.46874 * 60.00394 * 3 2 1 26 26 H 1.09000 * 110.51486 * 24.16264 * 6 4 2 27 27 H 1.09000 * 110.62726 * 261.50882 * 6 4 2 28 28 H 1.09005 * 110.51421 * 241.35469 * 7 6 4 29 29 H 1.09004 * 110.63217 * 118.69765 * 7 6 4 30 30 H 0.97002 * 119.99918 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6519 -1.7394 1.2835 6 6 3.5845 -0.7329 1.2705 7 6 3.9408 -0.5484 2.7626 8 6 2.5693 -0.4465 3.4661 9 1 2.2624 -1.4224 3.8424 10 6 2.6303 0.5533 4.5921 11 1 3.5585 1.0577 4.8167 12 6 1.5011 0.8241 5.3354 13 7 0.3709 0.2095 5.0623 14 14 1.5768 2.0628 6.7316 15 1 2.9535 2.6101 6.8336 16 1 0.6234 3.1694 6.4638 17 1 1.2136 1.3943 8.0069 18 8 1.6586 0.0060 2.4406 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5137 -0.8901 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.9809 0.0919 0.6784 27 1 3.9665 -1.6848 0.9015 28 1 4.5133 0.3677 2.9081 29 1 4.4978 -1.4088 3.1337 30 1 -0.4236 0.4003 5.5850 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307407440.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:20 Heat of formation + Delta-G solvation = -85.628391 kcal Electronic energy + Delta-G solvation = -11827.799982 eV Core-core repulsion = 9814.556417 eV Total energy + Delta-G solvation = -2013.243564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.13635 -35.95602 -34.34040 -32.52641 -29.77680 -27.95339 -26.47614 -23.54097 -21.73239 -20.46688 -18.77513 -16.86997 -16.62988 -16.02998 -15.80048 -14.97513 -14.41068 -14.26195 -13.79048 -13.59853 -13.01565 -12.86110 -12.67363 -12.37798 -12.16946 -12.03504 -11.84673 -11.63011 -11.23281 -11.09537 -10.95736 -10.70664 -9.95785 -8.16257 -6.36236 1.38801 1.40139 1.52762 2.39868 3.06774 3.68307 3.88632 4.02824 4.24803 4.27202 4.42201 4.50300 4.69242 4.81444 4.88626 4.94310 5.02352 5.06592 5.11354 5.20776 5.29046 5.33659 5.50833 5.56750 5.68052 5.74031 6.17919 6.57698 6.95889 7.38911 8.92620 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047748 B = 0.013291 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.267101 B = 2106.258934 C = 2344.556246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.137 4.137 4 C 0.053 3.947 5 H 0.039 0.961 6 C -0.142 4.142 7 C -0.140 4.140 8 C 0.195 3.805 9 H -0.015 1.015 10 C -0.550 4.550 11 H 0.064 0.936 12 C 0.020 3.980 13 N -0.904 5.904 14 Si 0.963 3.037 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.275 1.275 18 O -0.374 6.374 19 H 0.027 0.973 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.101 0.899 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -0.236 -8.976 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.005 4.005 5 H 0.057 0.943 6 C -0.179 4.179 7 C -0.178 4.178 8 C 0.139 3.861 9 H 0.003 0.997 10 C -0.587 4.587 11 H 0.082 0.918 12 C -0.181 4.181 13 N -0.542 5.542 14 Si 0.787 3.213 15 H -0.185 1.185 16 H -0.206 1.206 17 H -0.200 1.200 18 O -0.294 6.294 19 H 0.046 0.954 20 H 0.091 0.909 21 H 0.070 0.930 22 H 0.119 0.881 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.429 -0.103 -8.905 9.543 hybrid contribution -0.205 0.224 1.058 1.101 sum 3.224 0.121 -7.847 8.484 Atomic orbital electron populations 1.21702 0.95441 1.01314 1.01060 1.21145 0.96018 0.96917 0.95953 1.21733 1.00974 0.95727 1.00969 1.23160 0.94158 0.94656 0.88565 0.94328 1.22997 0.95691 1.03002 0.96208 1.22906 0.98265 1.01074 0.95562 1.20384 0.85345 0.93262 0.87147 0.99702 1.21502 0.96575 1.26303 1.14368 0.91770 1.25986 0.94963 0.97592 0.99607 1.70190 1.00904 1.42638 1.40448 0.85453 0.78586 0.78661 0.78583 1.18517 1.20642 1.20025 1.89456 1.57475 1.63682 1.18802 0.95368 0.90869 0.93008 0.88139 0.92118 0.91186 0.95162 0.89699 0.89643 0.92237 0.91478 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.10 71.98 0.65 -3.92 16 2 C -0.08 -2.68 2.84 -10.80 -0.03 -2.71 16 3 C -0.14 -4.42 8.77 71.98 0.63 -3.79 16 4 C 0.05 2.15 3.00 31.10 0.09 2.24 16 5 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.14 -4.95 6.46 31.61 0.20 -4.75 16 7 C -0.14 -5.95 6.62 31.61 0.21 -5.74 16 8 C 0.19 10.61 3.08 30.35 0.09 10.70 16 9 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 10 C -0.55 -32.24 8.78 25.60 0.22 -32.02 16 11 H 0.06 3.62 7.58 -2.91 -0.02 3.60 16 12 C 0.02 1.18 5.42 84.65 0.46 1.64 16 13 N -0.90 -56.29 13.00 21.45 0.28 -56.02 16 14 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 15 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 O -0.37 -20.11 9.44 -148.98 -1.41 -21.51 16 19 H 0.03 1.14 7.85 -2.39 -0.02 1.12 16 20 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 23 H 0.06 1.82 6.11 -2.39 -0.01 1.80 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.20 7.61 -2.38 -0.02 1.18 16 26 H 0.08 2.66 5.79 -2.39 -0.01 2.65 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.06 2.52 7.72 -2.38 -0.02 2.50 16 29 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -67.19 243.46 4.53 -62.67 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.09 Total: 5.99 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 2.54 Total: -38.34 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.41 Total: -21.51 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -67.19 4.53 -62.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407440.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.961 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds