Wall clock time and date at job start Mon Mar 30 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 O 1.42894 * 109.47341 * 65.57999 * 3 2 1 5 5 C 1.50710 * 109.46581 * 305.57910 * 3 2 1 6 6 H 1.07999 * 119.99721 * 295.68548 * 5 3 2 7 7 C 1.37876 * 119.99805 * 115.69325 * 5 3 2 8 8 N 1.31514 * 120.00050 * 162.85341 * 7 5 3 9 9 Si 1.86808 * 119.99669 * 342.84774 * 7 5 3 10 10 H 1.48505 * 109.46959 * 95.48894 * 9 7 5 11 11 H 1.48496 * 109.46817 * 215.48440 * 9 7 5 12 12 H 1.48495 * 109.47156 * 335.48311 * 9 7 5 13 13 C 1.52999 * 109.47218 * 185.58265 * 3 2 1 14 14 H 1.09002 * 115.54621 * 34.41213 * 13 3 2 15 15 C 1.52995 * 117.49926 * 248.74433 * 13 3 2 16 16 C 1.53000 * 117.49900 * 180.08367 * 13 3 2 17 17 H 1.08995 * 117.49596 * 359.97438 * 16 13 3 18 18 C 1.52998 * 117.49675 * 214.97617 * 16 13 3 19 19 H 1.08992 * 109.47022 * 294.55218 * 1 2 3 20 20 H 1.09001 * 109.46802 * 174.54885 * 1 2 3 21 21 H 1.08995 * 109.47035 * 54.55303 * 1 2 3 22 22 H 1.09006 * 109.46964 * 119.99952 * 2 1 3 23 23 H 1.09000 * 109.47243 * 239.99507 * 2 1 3 24 24 H 0.96697 * 114.00235 * 176.58460 * 4 3 2 25 25 H 0.97001 * 119.99622 * 179.97438 * 8 7 5 26 26 H 1.09005 * 117.49715 * 0.02562 * 15 13 3 27 27 H 1.08999 * 117.50068 * 144.99752 * 15 13 3 28 28 H 1.09000 * 109.47205 * 60.00441 * 18 16 13 29 29 H 1.08998 * 109.47170 * 179.97438 * 18 16 13 30 30 H 1.08992 * 109.47472 * 299.99924 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6737 2.0773 1.2267 5 6 1.4280 2.1916 -1.1557 6 1 1.6535 1.8973 -2.1700 7 6 0.5803 3.2526 -0.9179 8 7 0.3140 4.1097 -1.8792 9 14 -0.1900 3.4727 0.7697 10 1 0.6288 4.4202 1.5678 11 1 -1.5654 4.0120 0.6194 12 1 -0.2458 2.1608 1.4632 13 6 3.5636 1.4448 -0.1403 14 1 3.9795 0.6526 -0.7629 15 6 4.3838 1.8965 1.0696 16 6 4.2693 2.8022 -0.1591 17 1 3.6481 3.6935 -0.0720 18 6 5.5051 2.9435 -1.0499 19 1 -0.3633 0.4270 0.9347 20 1 -0.3633 -1.0230 -0.0976 21 1 -0.3633 0.5960 -0.8372 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 2.0098 2.9793 1.3184 25 1 -0.2827 4.8560 -1.7120 26 1 3.8379 2.1917 1.9658 27 1 5.3393 1.4016 1.2431 28 1 5.2303 2.7474 -2.0863 29 1 5.9006 3.9557 -0.9646 30 1 6.2646 2.2285 -0.7339 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307409055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:46 Heat of formation + Delta-G solvation = -26.272880 kcal Electronic energy + Delta-G solvation = -12090.292826 eV Core-core repulsion = 10079.623109 eV Total energy + Delta-G solvation = -2010.669716 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.62171 -35.13142 -32.45053 -31.75096 -28.19250 -26.54025 -24.04030 -21.07099 -19.73098 -19.03921 -17.23864 -15.99925 -15.29553 -14.02617 -13.44925 -13.07834 -12.85298 -12.59914 -12.43052 -11.91881 -11.74036 -11.16159 -10.99462 -10.76647 -10.65771 -10.18741 -9.99641 -9.89656 -9.58306 -9.03189 -8.73754 -8.20543 -7.92865 -6.07338 -4.06466 3.39004 3.61620 3.85311 4.54256 4.59024 5.19052 5.36366 5.38199 5.68442 5.73244 5.95259 6.14739 6.21200 6.28819 6.30417 6.35507 6.43720 6.59802 6.73678 6.78275 6.89414 7.02106 7.11873 7.33656 7.42928 7.69142 8.22327 8.69107 8.94740 9.57437 11.02702 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.020435 C = 0.017003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.153070 B = 1369.894742 C = 1646.399224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C 0.245 3.755 4 O -0.550 6.550 5 C -0.537 4.537 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.932 3.068 10 H -0.308 1.308 11 H -0.332 1.332 12 H -0.242 1.242 13 C -0.145 4.145 14 H 0.091 0.909 15 C -0.196 4.196 16 C -0.145 4.145 17 H 0.102 0.898 18 C -0.114 4.114 19 H 0.053 0.947 20 H 0.027 0.973 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.057 0.943 24 H 0.359 0.641 25 H 0.262 0.738 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 -3.814 4.533 8.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C 0.206 3.794 4 O -0.360 6.360 5 C -0.575 4.575 6 H 0.094 0.906 7 C -0.143 4.143 8 N -0.525 5.525 9 Si 0.771 3.229 10 H -0.237 1.237 11 H -0.265 1.265 12 H -0.169 1.169 13 C -0.164 4.164 14 H 0.109 0.891 15 C -0.233 4.233 16 C -0.163 4.163 17 H 0.120 0.880 18 C -0.171 4.171 19 H 0.072 0.928 20 H 0.046 0.954 21 H 0.091 0.909 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.209 0.791 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.251 -4.239 4.533 8.129 hybrid contribution -0.035 0.817 0.572 0.998 sum 5.216 -3.422 5.105 8.061 Atomic orbital electron populations 1.21835 0.96212 0.98966 1.03246 1.21387 0.96394 0.96029 0.99157 1.18926 0.87292 0.90786 0.82417 1.86568 1.74900 1.31620 1.42940 1.21089 1.28825 1.14372 0.93167 0.90601 1.25193 0.96050 0.94482 0.98558 1.70053 1.35340 1.12741 1.34404 0.86014 0.75831 0.77937 0.83142 1.23723 1.26542 1.16884 1.23289 0.96942 0.96988 0.99207 0.89079 1.23178 1.01151 1.05465 0.93469 1.22178 0.99354 0.95942 0.98842 0.88009 1.21265 0.95741 1.00544 0.99532 0.92813 0.95402 0.90871 0.94352 0.92391 0.79120 0.92894 0.89074 0.90272 0.92329 0.93080 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.60 37.16 0.32 -2.75 16 2 C -0.09 -1.92 5.21 -26.73 -0.14 -2.06 16 3 C 0.25 5.57 0.80 -91.77 -0.07 5.50 16 4 O -0.55 -12.55 6.56 -35.23 -0.23 -12.78 16 5 C -0.54 -14.39 6.86 -34.44 -0.24 -14.63 16 6 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 7 C 0.06 1.68 5.40 -17.82 -0.10 1.58 16 8 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 9 Si 0.93 23.31 23.53 -169.99 -4.00 19.31 16 10 H -0.31 -7.47 6.92 56.52 0.39 -7.08 16 11 H -0.33 -8.71 7.11 56.52 0.40 -8.31 16 12 H -0.24 -5.90 4.01 56.52 0.23 -5.67 16 13 C -0.15 -2.93 4.85 -90.62 -0.44 -3.37 16 14 H 0.09 1.76 8.11 -51.93 -0.42 1.34 16 15 C -0.20 -3.45 9.39 -26.70 -0.25 -3.70 16 16 C -0.15 -2.78 5.41 -90.58 -0.49 -3.27 16 17 H 0.10 2.18 7.79 -51.93 -0.40 1.77 16 18 C -0.11 -1.86 10.19 37.16 0.38 -1.48 16 19 H 0.05 1.17 6.00 -51.93 -0.31 0.86 16 20 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.07 1.70 6.81 -51.93 -0.35 1.35 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.36 7.95 5.21 45.56 0.24 8.19 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.62 6.79 -51.93 -0.35 1.26 16 27 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.66 7.90 -51.93 -0.41 0.25 16 LS Contribution 232.52 15.07 3.50 3.50 Total: -1.00 -29.07 232.52 -5.27 -34.34 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.29 Total: 5.78 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.03 Total: -24.18 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.97 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.23 Total: -12.78 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.00 Total: 19.31 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.07 -5.27 -34.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.064 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds