Wall clock time and date at job start Mon Mar 30 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 O 1.42894 * 109.47341 * 65.57999 * 3 2 1 5 5 C 1.50710 * 109.46581 * 305.57910 * 3 2 1 6 6 H 1.07999 * 119.99721 * 295.68548 * 5 3 2 7 7 C 1.37876 * 119.99805 * 115.69325 * 5 3 2 8 8 N 1.31514 * 120.00050 * 162.85341 * 7 5 3 9 9 Si 1.86808 * 119.99669 * 342.84774 * 7 5 3 10 10 H 1.48505 * 109.46959 * 95.48894 * 9 7 5 11 11 H 1.48496 * 109.46817 * 215.48440 * 9 7 5 12 12 H 1.48495 * 109.47156 * 335.48311 * 9 7 5 13 13 C 1.52999 * 109.47218 * 185.58265 * 3 2 1 14 14 H 1.09002 * 115.54621 * 34.41213 * 13 3 2 15 15 C 1.52995 * 117.49926 * 248.74433 * 13 3 2 16 16 C 1.53000 * 117.49900 * 180.08367 * 13 3 2 17 17 H 1.08995 * 117.49596 * 359.97438 * 16 13 3 18 18 C 1.52998 * 117.49675 * 214.97617 * 16 13 3 19 19 H 1.08992 * 109.47022 * 294.55218 * 1 2 3 20 20 H 1.09001 * 109.46802 * 174.54885 * 1 2 3 21 21 H 1.08995 * 109.47035 * 54.55303 * 1 2 3 22 22 H 1.09006 * 109.46964 * 119.99952 * 2 1 3 23 23 H 1.09000 * 109.47243 * 239.99507 * 2 1 3 24 24 H 0.96697 * 114.00235 * 176.58460 * 4 3 2 25 25 H 0.97001 * 119.99622 * 179.97438 * 8 7 5 26 26 H 1.09005 * 117.49715 * 0.02562 * 15 13 3 27 27 H 1.08999 * 117.50068 * 144.99752 * 15 13 3 28 28 H 1.09000 * 109.47205 * 60.00441 * 18 16 13 29 29 H 1.08998 * 109.47170 * 179.97438 * 18 16 13 30 30 H 1.08992 * 109.47472 * 299.99924 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6737 2.0773 1.2267 5 6 1.4280 2.1916 -1.1557 6 1 1.6535 1.8973 -2.1700 7 6 0.5803 3.2526 -0.9179 8 7 0.3140 4.1097 -1.8792 9 14 -0.1900 3.4727 0.7697 10 1 0.6288 4.4202 1.5678 11 1 -1.5654 4.0120 0.6194 12 1 -0.2458 2.1608 1.4632 13 6 3.5636 1.4448 -0.1403 14 1 3.9795 0.6526 -0.7629 15 6 4.3838 1.8965 1.0696 16 6 4.2693 2.8022 -0.1591 17 1 3.6481 3.6935 -0.0720 18 6 5.5051 2.9435 -1.0499 19 1 -0.3633 0.4270 0.9347 20 1 -0.3633 -1.0230 -0.0976 21 1 -0.3633 0.5960 -0.8372 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 2.0098 2.9793 1.3184 25 1 -0.2827 4.8560 -1.7120 26 1 3.8379 2.1917 1.9658 27 1 5.3393 1.4016 1.2431 28 1 5.2303 2.7474 -2.0863 29 1 5.9006 3.9557 -0.9646 30 1 6.2646 2.2285 -0.7339 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307409055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:46 Heat of formation + Delta-G solvation = -45.494003 kcal Electronic energy + Delta-G solvation = -12091.126316 eV Core-core repulsion = 10079.623109 eV Total energy + Delta-G solvation = -2011.503207 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.32043 -36.75877 -34.43118 -33.66776 -29.65912 -28.36556 -25.93395 -22.62543 -21.27681 -20.76820 -19.25531 -17.78439 -17.28108 -15.76500 -15.18672 -14.68240 -14.57316 -14.36698 -13.96570 -13.77653 -13.35749 -12.86316 -12.64272 -12.58414 -12.17737 -12.02583 -11.81652 -11.62145 -11.38464 -10.71536 -10.56070 -10.07734 -9.82631 -8.26920 -6.26446 1.36986 1.56896 1.83569 2.47273 2.98256 3.16393 3.61823 3.86776 4.20309 4.26073 4.51675 4.54670 4.60517 4.68017 4.89628 4.98218 5.01265 5.08588 5.17592 5.27375 5.32525 5.40528 5.52997 5.60982 5.65513 5.76149 6.12913 6.68077 6.82050 7.40897 8.87481 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.020435 C = 0.017003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.153070 B = 1369.894742 C = 1646.399224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C 0.241 3.759 4 O -0.550 6.550 5 C -0.523 4.523 6 H 0.035 0.965 7 C 0.010 3.990 8 N -0.941 5.941 9 Si 0.989 3.011 10 H -0.294 1.294 11 H -0.352 1.352 12 H -0.228 1.228 13 C -0.166 4.166 14 H 0.101 0.899 15 C -0.163 4.163 16 C -0.159 4.159 17 H 0.071 0.929 18 C -0.109 4.109 19 H 0.046 0.954 20 H 0.059 0.941 21 H 0.041 0.959 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.362 0.638 25 H 0.260 0.740 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.987 -5.125 6.429 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C 0.201 3.799 4 O -0.360 6.360 5 C -0.561 4.561 6 H 0.053 0.947 7 C -0.188 4.188 8 N -0.579 5.579 9 Si 0.826 3.174 10 H -0.223 1.223 11 H -0.287 1.287 12 H -0.154 1.154 13 C -0.185 4.185 14 H 0.119 0.881 15 C -0.199 4.199 16 C -0.178 4.178 17 H 0.090 0.910 18 C -0.166 4.166 19 H 0.065 0.935 20 H 0.078 0.922 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.212 0.788 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.653 -5.570 6.444 10.808 hybrid contribution -0.430 1.180 -0.092 1.259 sum 6.223 -4.391 6.352 9.917 Atomic orbital electron populations 1.21775 0.96487 1.00393 1.01365 1.21395 0.96167 0.94761 1.00685 1.18932 0.89051 0.91158 0.80711 1.86524 1.75130 1.31808 1.42507 1.21285 1.27800 1.13967 0.93017 0.94678 1.25900 0.96737 0.94535 1.01594 1.70175 1.37109 1.14026 1.36633 0.85068 0.74129 0.78483 0.79736 1.22275 1.28665 1.15371 1.23143 0.95257 0.98100 1.02028 0.88138 1.23217 1.01563 1.03047 0.92122 1.22216 1.00064 0.94408 1.01065 0.91036 1.21243 0.95100 1.02161 0.98112 0.93548 0.92163 0.93998 0.92001 0.91570 0.78844 0.93128 0.88946 0.87143 0.93710 0.91871 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 8.60 71.98 0.62 -5.13 16 2 C -0.09 -3.63 5.21 30.59 0.16 -3.47 16 3 C 0.24 10.59 0.80 -11.54 -0.01 10.58 16 4 O -0.55 -23.78 6.56 -148.98 -0.98 -24.75 16 5 C -0.52 -28.44 6.86 25.60 0.18 -28.26 16 6 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 7 C 0.01 0.54 5.40 84.65 0.46 1.00 16 8 N -0.94 -58.53 13.96 21.45 0.30 -58.24 16 9 Si 0.99 48.34 23.53 68.60 1.61 49.96 16 10 H -0.29 -13.60 6.92 99.48 0.69 -12.91 16 11 H -0.35 -18.26 7.11 99.48 0.71 -17.55 16 12 H -0.23 -10.52 4.01 99.48 0.40 -10.12 16 13 C -0.17 -6.34 4.85 -10.80 -0.05 -6.39 16 14 H 0.10 3.63 8.11 -2.39 -0.02 3.61 16 15 C -0.16 -5.12 9.39 30.62 0.29 -4.83 16 16 C -0.16 -5.83 5.41 -10.77 -0.06 -5.89 16 17 H 0.07 3.05 7.79 -2.39 -0.02 3.03 16 18 C -0.11 -3.33 10.19 71.98 0.73 -2.59 16 19 H 0.05 1.91 6.00 -2.39 -0.01 1.89 16 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.04 1.92 6.81 -2.39 -0.02 1.91 16 22 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.36 15.28 5.21 -74.06 -0.39 14.90 16 25 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.09 2.91 6.79 -2.38 -0.02 2.90 16 27 H 0.11 2.84 8.05 -2.39 -0.02 2.82 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.80 7.90 -2.39 -0.02 1.78 16 Total: -1.00 -62.85 232.52 3.64 -59.20 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.39 Total: 18.82 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 2.31 Total: -44.99 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.24 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.98 Total: -24.75 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.61 Total: 49.96 kcal Total: -62.85 3.64 -59.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.710 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds