Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 O 1.42893 * 109.47509 * 56.77613 * 3 2 1 5 5 C 1.50710 * 109.46888 * 296.77566 * 3 2 1 6 6 H 1.07998 * 119.99738 * 114.53560 * 5 3 2 7 7 C 1.37868 * 119.99959 * 294.53928 * 5 3 2 8 8 N 1.31523 * 120.00245 * 4.81787 * 7 5 3 9 9 Si 1.86801 * 120.00181 * 184.81627 * 7 5 3 10 10 H 1.48504 * 109.46690 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47155 * 119.99630 * 9 7 5 12 12 H 1.48503 * 109.47356 * 240.00375 * 9 7 5 13 13 C 1.53000 * 109.47201 * 176.78040 * 3 2 1 14 14 H 1.08998 * 115.56145 * 27.29939 * 13 3 2 15 15 C 1.53005 * 117.49670 * 241.61707 * 13 3 2 16 16 C 1.52998 * 117.49854 * 172.99191 * 13 3 2 17 17 H 1.09002 * 117.49886 * 214.97397 * 16 13 3 18 18 C 1.52994 * 117.52127 * 0.02562 * 16 13 3 19 19 H 1.09000 * 109.47363 * 65.11939 * 1 2 3 20 20 H 1.09002 * 109.47234 * 185.12152 * 1 2 3 21 21 H 1.09006 * 109.47228 * 305.12117 * 1 2 3 22 22 H 1.08997 * 109.47332 * 239.99886 * 2 1 3 23 23 H 1.08997 * 109.47124 * 119.99418 * 2 1 3 24 24 H 0.96703 * 114.00169 * 191.23756 * 4 3 2 25 25 H 0.96999 * 119.99652 * 180.02562 * 8 7 5 26 26 H 1.08997 * 117.49875 * 145.02131 * 15 13 3 27 27 H 1.08997 * 117.51892 * 359.97438 * 15 13 3 28 28 H 1.09000 * 109.47849 * 166.92157 * 18 16 13 29 29 H 1.09005 * 109.47025 * 286.92628 * 18 16 13 30 30 H 1.08999 * 109.47545 * 46.91914 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5028 2.1377 1.1270 5 6 1.6039 2.1295 -1.2686 6 1 0.9085 2.9546 -1.2242 7 6 2.0926 1.7045 -2.4857 8 7 2.8641 0.6412 -2.5496 9 14 1.6590 2.6387 -4.0441 10 1 0.7829 3.7886 -3.7042 11 1 2.9026 3.1360 -4.6853 12 1 0.9462 1.7341 -4.9815 13 6 3.5678 1.4433 0.0810 14 1 4.0609 0.5615 -0.3280 15 6 4.2103 2.1111 1.2985 16 6 4.2827 2.7873 -0.0721 17 1 5.2462 2.7897 -0.5819 18 6 3.4155 4.0281 -0.2940 19 1 -0.3634 0.4324 -0.9323 20 1 -0.3634 -1.0236 0.0917 21 1 -0.3634 0.5912 0.8406 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.6407 3.0945 1.1012 25 1 3.2082 0.3425 -3.4059 26 1 5.1262 1.6686 1.6904 27 1 3.5449 2.5503 2.0417 28 1 4.0203 4.9240 -0.1541 29 1 3.0147 4.0148 -1.3076 30 1 2.5933 4.0295 0.4216 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307409059.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = -35.014272 kcal Electronic energy + Delta-G solvation = -12246.683135 eV Core-core repulsion = 10235.634363 eV Total energy + Delta-G solvation = -2011.048772 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.28671 -34.21842 -32.77784 -30.97179 -27.68113 -26.49003 -23.66057 -20.62545 -19.67002 -18.69471 -16.91744 -15.23126 -14.91898 -13.96439 -13.34351 -12.84232 -12.51022 -12.15143 -11.91523 -11.19755 -11.06758 -10.95558 -10.89102 -10.51404 -10.44908 -10.28577 -9.87745 -9.58000 -9.45999 -8.94768 -8.53729 -8.20039 -8.07160 -6.03039 -4.06779 3.25227 3.34861 3.37518 4.38649 4.98733 5.27715 5.76508 5.88305 6.01708 6.18696 6.40028 6.48978 6.58643 6.63736 6.73486 6.78937 6.82290 7.10857 7.14214 7.27870 7.35096 7.46987 7.51165 7.69619 7.79023 8.12558 8.26792 8.68833 9.23599 9.58923 11.01135 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.022262 C = 0.016860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.314667 B = 1257.432990 C = 1660.324561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C 0.276 3.724 4 O -0.585 6.585 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.075 3.925 8 N -0.880 5.880 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C -0.106 4.106 14 H 0.099 0.901 15 C -0.209 4.209 16 C -0.146 4.146 17 H 0.078 0.922 18 C -0.104 4.104 19 H 0.054 0.946 20 H 0.021 0.979 21 H 0.043 0.957 22 H 0.094 0.906 23 H 0.021 0.979 24 H 0.355 0.645 25 H 0.259 0.741 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 2.349 2.607 3.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C 0.237 3.763 4 O -0.394 6.394 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.128 4.128 8 N -0.518 5.518 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.125 4.125 14 H 0.117 0.883 15 C -0.246 4.246 16 C -0.165 4.165 17 H 0.097 0.903 18 C -0.161 4.161 19 H 0.073 0.927 20 H 0.040 0.960 21 H 0.062 0.938 22 H 0.112 0.888 23 H 0.039 0.961 24 H 0.203 0.797 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.518 1.630 2.633 3.140 hybrid contribution 0.219 0.964 -1.226 1.575 sum 0.737 2.593 1.407 3.041 Atomic orbital electron populations 1.21505 0.97558 0.97906 1.01513 1.21410 0.94675 0.96883 1.00446 1.18340 0.85668 0.89546 0.82728 1.86373 1.82530 1.22479 1.47969 1.21562 1.26701 1.16928 0.91183 0.92244 1.24772 0.94810 0.94735 0.98475 1.69893 1.33863 1.22970 1.25070 0.86703 0.78217 0.80247 0.83866 1.19769 1.20999 1.21105 1.22967 0.98149 0.95095 0.96276 0.88286 1.23118 1.01926 1.07402 0.92176 1.21929 0.99992 0.96049 0.98484 0.90343 1.21343 0.97519 0.94072 1.03162 0.92658 0.95954 0.93813 0.88767 0.96064 0.79663 0.93052 0.91315 0.89391 0.95355 0.90705 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.52 37.16 0.35 -2.48 16 2 C -0.10 -2.33 5.00 -26.73 -0.13 -2.46 16 3 C 0.28 6.68 0.52 -91.77 -0.05 6.64 16 4 O -0.58 -13.51 10.66 -35.23 -0.38 -13.89 16 5 C -0.53 -13.35 4.04 -34.44 -0.14 -13.49 16 6 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 7 C 0.07 1.92 4.99 -17.82 -0.09 1.83 16 8 N -0.88 -23.38 10.18 55.43 0.56 -22.82 16 9 Si 0.88 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.11 -2.48 4.04 -90.62 -0.37 -2.84 16 14 H 0.10 2.51 7.59 -51.93 -0.39 2.11 16 15 C -0.21 -4.26 9.49 -26.72 -0.25 -4.51 16 16 C -0.15 -3.12 6.28 -90.62 -0.57 -3.69 16 17 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 18 C -0.10 -2.07 8.41 37.15 0.31 -1.76 16 19 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.04 0.96 7.44 -51.93 -0.39 0.57 16 22 H 0.09 2.45 6.27 -51.93 -0.33 2.12 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.35 7.41 5.42 45.56 0.25 7.66 16 25 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.75 6.86 -51.93 -0.36 1.40 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.63 6.58 -51.93 -0.34 1.29 16 30 H 0.05 0.93 4.69 -51.93 -0.24 0.68 16 LS Contribution 233.16 15.07 3.51 3.51 Total: -1.00 -26.36 233.16 -6.10 -32.46 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.85 Total: 8.08 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -0.93 Total: -22.76 kcal Atomic # 7 Polarization: -23.38 SS G_CDS: 0.56 Total: -22.82 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.38 Total: -13.89 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.36 -6.10 -32.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409059.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.554 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds