Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 O 1.42893 * 109.47509 * 56.77613 * 3 2 1 5 5 C 1.50710 * 109.46888 * 296.77566 * 3 2 1 6 6 H 1.07998 * 119.99738 * 114.53560 * 5 3 2 7 7 C 1.37868 * 119.99959 * 294.53928 * 5 3 2 8 8 N 1.31523 * 120.00245 * 4.81787 * 7 5 3 9 9 Si 1.86801 * 120.00181 * 184.81627 * 7 5 3 10 10 H 1.48504 * 109.46690 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47155 * 119.99630 * 9 7 5 12 12 H 1.48503 * 109.47356 * 240.00375 * 9 7 5 13 13 C 1.53000 * 109.47201 * 176.78040 * 3 2 1 14 14 H 1.08998 * 115.56145 * 27.29939 * 13 3 2 15 15 C 1.53005 * 117.49670 * 241.61707 * 13 3 2 16 16 C 1.52998 * 117.49854 * 172.99191 * 13 3 2 17 17 H 1.09002 * 117.49886 * 214.97397 * 16 13 3 18 18 C 1.52994 * 117.52127 * 0.02562 * 16 13 3 19 19 H 1.09000 * 109.47363 * 65.11939 * 1 2 3 20 20 H 1.09002 * 109.47234 * 185.12152 * 1 2 3 21 21 H 1.09006 * 109.47228 * 305.12117 * 1 2 3 22 22 H 1.08997 * 109.47332 * 239.99886 * 2 1 3 23 23 H 1.08997 * 109.47124 * 119.99418 * 2 1 3 24 24 H 0.96703 * 114.00169 * 191.23756 * 4 3 2 25 25 H 0.96999 * 119.99652 * 180.02562 * 8 7 5 26 26 H 1.08997 * 117.49875 * 145.02131 * 15 13 3 27 27 H 1.08997 * 117.51892 * 359.97438 * 15 13 3 28 28 H 1.09000 * 109.47849 * 166.92157 * 18 16 13 29 29 H 1.09005 * 109.47025 * 286.92628 * 18 16 13 30 30 H 1.08999 * 109.47545 * 46.91914 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5028 2.1377 1.1270 5 6 1.6039 2.1295 -1.2686 6 1 0.9085 2.9546 -1.2242 7 6 2.0926 1.7045 -2.4857 8 7 2.8641 0.6412 -2.5496 9 14 1.6590 2.6387 -4.0441 10 1 0.7829 3.7886 -3.7042 11 1 2.9026 3.1360 -4.6853 12 1 0.9462 1.7341 -4.9815 13 6 3.5678 1.4433 0.0810 14 1 4.0609 0.5615 -0.3280 15 6 4.2103 2.1111 1.2985 16 6 4.2827 2.7873 -0.0721 17 1 5.2462 2.7897 -0.5819 18 6 3.4155 4.0281 -0.2940 19 1 -0.3634 0.4324 -0.9323 20 1 -0.3634 -1.0236 0.0917 21 1 -0.3634 0.5912 0.8406 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.6407 3.0945 1.1012 25 1 3.2082 0.3425 -3.4059 26 1 5.1262 1.6686 1.6904 27 1 3.5449 2.5503 2.0417 28 1 4.0203 4.9240 -0.1541 29 1 3.0147 4.0148 -1.3076 30 1 2.5933 4.0295 0.4216 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307409059.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = -50.312399 kcal Electronic energy + Delta-G solvation = -12247.346511 eV Core-core repulsion = 10235.634363 eV Total energy + Delta-G solvation = -2011.712148 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.07775 -35.99177 -34.70364 -32.86810 -29.32325 -28.40393 -25.53754 -22.38449 -21.43889 -20.51816 -18.83276 -17.07660 -16.76381 -15.80314 -15.12698 -14.66138 -14.35051 -13.94066 -13.65852 -12.89876 -12.80318 -12.76803 -12.71820 -12.40600 -12.20975 -12.00132 -11.77031 -11.45194 -11.31143 -10.70201 -10.43083 -10.05471 -9.87873 -7.99750 -6.07569 1.40112 1.46190 1.52964 2.46785 3.21700 3.35549 4.01122 4.18403 4.32043 4.49945 4.68615 4.74888 4.80091 4.90236 5.02780 5.15815 5.21764 5.28417 5.42682 5.50211 5.56182 5.64064 5.75210 5.77022 5.88610 6.20657 6.33694 6.74355 7.37287 7.63942 9.02979 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.022262 C = 0.016860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.314667 B = 1257.432990 C = 1660.324561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.276 3.724 4 O -0.587 6.587 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.039 3.961 8 N -0.900 5.900 9 Si 0.930 3.070 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.288 1.288 13 C -0.133 4.133 14 H 0.072 0.928 15 C -0.184 4.184 16 C -0.147 4.147 17 H 0.078 0.922 18 C -0.100 4.100 19 H 0.039 0.961 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.023 0.977 24 H 0.364 0.636 25 H 0.257 0.743 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 3.243 3.200 4.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 C 0.236 3.764 4 O -0.397 6.397 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.161 4.161 8 N -0.539 5.539 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.215 1.215 13 C -0.152 4.152 14 H 0.090 0.910 15 C -0.221 4.221 16 C -0.165 4.165 17 H 0.096 0.904 18 C -0.157 4.157 19 H 0.058 0.942 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.090 0.910 23 H 0.042 0.958 24 H 0.214 0.786 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.476 2.537 3.232 4.137 hybrid contribution 0.239 0.675 -1.374 1.549 sum 0.714 3.212 1.859 3.779 Atomic orbital electron populations 1.21405 0.96167 0.99327 1.00688 1.21383 0.95940 0.97014 0.99450 1.18259 0.86287 0.89384 0.82455 1.86337 1.82519 1.23346 1.47468 1.21634 1.26151 1.16444 0.91912 0.93041 1.25263 0.94996 0.95318 1.00536 1.70009 1.34703 1.23900 1.25253 0.85947 0.77816 0.79289 0.81236 1.19319 1.21069 1.21452 1.22768 0.97641 0.95401 0.99386 0.90984 1.23136 1.02088 1.05458 0.91402 1.22037 0.99802 0.95493 0.99213 0.90392 1.21283 0.97875 0.94633 1.01894 0.94162 0.93653 0.93597 0.90978 0.95786 0.78567 0.93351 0.89570 0.88553 0.92460 0.92910 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 9.52 71.98 0.69 -4.46 16 2 C -0.10 -4.79 5.00 30.59 0.15 -4.64 16 3 C 0.28 13.12 0.52 -11.54 -0.01 13.11 16 4 O -0.59 -26.10 10.66 -148.98 -1.59 -27.68 16 5 C -0.52 -26.26 4.04 25.60 0.10 -26.16 16 6 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 7 C 0.04 2.01 4.99 84.65 0.42 2.43 16 8 N -0.90 -48.16 10.18 21.45 0.22 -47.94 16 9 Si 0.93 41.68 29.54 68.60 2.03 43.70 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 C -0.13 -6.12 4.04 -10.79 -0.04 -6.16 16 14 H 0.07 3.69 7.59 -2.39 -0.02 3.67 16 15 C -0.18 -7.06 9.49 30.60 0.29 -6.77 16 16 C -0.15 -6.02 6.28 -10.79 -0.07 -6.09 16 17 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 18 C -0.10 -3.76 8.41 71.98 0.61 -3.16 16 19 H 0.04 1.83 7.50 -2.39 -0.02 1.81 16 20 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.04 1.94 7.44 -2.38 -0.02 1.92 16 22 H 0.07 3.78 6.27 -2.39 -0.01 3.77 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.36 14.45 5.42 -74.06 -0.40 14.05 16 25 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 26 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 27 H 0.10 3.55 6.86 -2.39 -0.02 3.53 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 2.22 6.58 -2.38 -0.02 2.20 16 30 H 0.05 1.93 4.69 -2.39 -0.01 1.92 16 Total: -1.00 -53.93 233.16 3.52 -50.42 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.72 Total: 23.39 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 2.14 Total: -41.89 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.22 Total: -47.94 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.59 Total: -27.68 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -53.93 3.52 -50.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409059.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.106 kcal (2) G-P(sol) polarization free energy of solvation -53.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds