Wall clock time and date at job start Mon Mar 30 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46849 * 2 1 4 4 C 1.50698 * 109.46898 * 119.99376 * 2 1 3 5 5 H 1.08005 * 119.99681 * 119.99977 * 4 2 1 6 6 C 1.37876 * 120.00295 * 299.99968 * 4 2 1 7 7 N 1.31507 * 120.00031 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47078 * 90.00300 * 8 6 4 10 10 H 1.48492 * 109.47066 * 210.00334 * 8 6 4 11 11 H 1.48503 * 109.47214 * 330.00405 * 8 6 4 12 12 N 1.46494 * 109.47078 * 239.99751 * 2 1 3 13 13 N 1.40097 * 120.00312 * 90.00333 * 12 2 1 14 14 C 1.28005 * 120.00377 * 180.02562 * 13 12 2 15 15 C 1.51138 * 138.73401 * 179.97438 * 14 13 12 16 16 O 1.43412 * 88.24389 * 206.19982 * 15 14 13 17 17 C 1.43412 * 88.06895 * 332.51330 * 16 15 14 18 18 H 1.09004 * 109.47445 * 300.00557 * 1 2 3 19 19 H 1.08994 * 109.46945 * 60.00308 * 1 2 3 20 20 H 1.08999 * 109.46849 * 180.02562 * 1 2 3 21 21 H 0.96998 * 120.00459 * 180.02562 * 7 6 4 22 22 H 0.97001 * 120.00089 * 269.99852 * 12 2 1 23 23 H 1.09002 * 113.43677 * 91.34031 * 15 14 13 24 24 H 1.08997 * 113.43400 * 321.05845 * 15 14 13 25 25 H 1.09005 * 113.43433 * 142.29369 * 17 16 15 26 26 H 1.08998 * 113.43461 * 272.57247 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.6296 -0.5456 4.4125 10 1 1.3431 -0.9490 5.1120 11 1 2.4858 -2.5660 3.7121 12 7 2.0183 -0.6906 -1.1961 13 7 2.2519 0.0298 -2.3747 14 6 2.6781 -0.5738 -3.4200 15 6 3.0562 -0.2462 -4.8462 16 8 2.7311 -1.5983 -5.1964 17 6 3.0565 -1.9738 -3.8511 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.7087 1.1616 3.4843 22 1 2.1800 -1.6468 -1.1720 23 1 4.1126 -0.0081 -4.9709 24 1 2.4010 0.4913 -5.3099 25 1 2.4010 -2.7445 -3.4455 26 1 4.1127 -2.2017 -3.7081 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307507137.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:41 Heat of formation + Delta-G solvation = 11.793919 kcal Electronic energy + Delta-G solvation = -10857.883125 eV Core-core repulsion = 8745.323766 eV Total energy + Delta-G solvation = -2112.559359 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.47043 -37.81708 -35.57202 -33.03894 -29.77151 -27.55929 -27.30864 -26.95102 -22.43412 -20.43329 -18.67602 -17.78330 -17.16374 -17.09147 -16.61353 -15.49306 -14.95081 -14.39648 -14.24968 -13.61501 -13.33407 -12.95194 -12.79623 -12.53780 -12.44834 -12.22052 -11.99991 -11.15207 -11.08891 -10.58533 -10.56098 -8.70412 -8.18905 -6.35906 1.30843 1.43601 1.44284 1.54791 1.93021 2.42876 2.94267 3.10610 3.74950 3.93834 4.30284 4.50777 4.66419 4.72192 4.84794 4.95911 4.96757 5.10407 5.31392 5.54017 5.76572 5.85552 6.17038 6.38414 6.82437 7.35727 7.73660 8.86755 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.076676 B = 0.008561 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.083213 B = 3269.881194 C = 3478.101359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.306 3.694 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.266 1.266 12 N -0.643 5.643 13 N -0.213 5.213 14 C -0.081 4.081 15 C 0.118 3.882 16 O -0.375 6.375 17 C 0.056 3.944 18 H 0.070 0.930 19 H 0.017 0.983 20 H 0.030 0.970 21 H 0.267 0.733 22 H 0.375 0.625 23 H 0.128 0.872 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -4.072 -8.814 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.203 3.797 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.380 5.380 13 N -0.022 5.022 14 C -0.278 4.278 15 C 0.039 3.961 16 O -0.293 6.293 17 C -0.023 4.023 18 H 0.089 0.911 19 H 0.036 0.964 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.211 0.789 23 H 0.146 0.854 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.885 -3.085 -8.415 9.769 hybrid contribution 0.285 -1.213 0.909 1.542 sum 4.171 -4.298 -7.506 9.603 Atomic orbital electron populations 1.22041 0.98910 0.99082 0.99672 1.18156 0.90239 0.91683 0.79635 0.98001 1.21506 1.32595 1.13568 0.91042 0.91962 1.25720 0.94811 0.95643 1.01952 1.70011 1.36759 1.23783 1.24751 0.85348 0.77974 0.78933 0.78084 1.20125 1.20578 1.19003 1.48362 1.75718 1.07687 1.06261 1.73103 1.08904 1.26823 0.93340 1.27435 1.05595 0.98052 0.96670 1.22921 1.03064 0.85793 0.84291 1.89887 1.87463 1.22973 1.28938 1.23405 1.02522 0.95316 0.81099 0.91150 0.96434 0.95112 0.92350 0.78853 0.85408 0.87478 0.89583 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.01 9.29 71.98 0.67 -6.34 15 2 C 0.31 16.17 3.23 44.25 0.14 16.31 15 3 H 0.00 0.12 8.14 -2.39 -0.02 0.10 15 4 C -0.55 -29.76 8.74 25.60 0.22 -29.54 15 5 H 0.06 3.26 7.79 -2.91 -0.02 3.24 15 6 C 0.02 1.03 5.30 84.66 0.45 1.48 15 7 N -0.91 -51.72 11.32 21.45 0.24 -51.47 15 8 Si 0.97 42.19 29.54 68.60 2.03 44.22 15 9 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 15 12 N -0.64 -29.19 6.09 -172.53 -1.05 -30.24 15 13 N -0.21 -8.85 11.50 -51.75 -0.59 -9.45 15 14 C -0.08 -2.60 8.95 46.86 0.42 -2.18 15 15 C 0.12 2.73 8.70 62.67 0.54 3.27 15 16 O -0.38 -10.07 12.77 -148.98 -1.90 -11.97 15 17 C 0.06 1.45 8.58 62.72 0.54 1.99 15 18 H 0.07 3.85 6.07 -2.39 -0.01 3.84 15 19 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15 22 H 0.37 15.65 8.48 -213.32 -1.81 13.84 15 23 H 0.13 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.11 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.09 2.21 8.14 -2.38 -0.02 2.19 15 26 H 0.12 2.39 8.14 -2.39 -0.02 2.37 15 Total: -1.00 -62.01 232.95 1.08 -60.93 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.63 Total: 13.00 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 2.99 Total: -15.01 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -1.40 Total: -91.16 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.90 Total: -11.97 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -62.01 1.08 -60.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307507137.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.725 kcal (2) G-P(sol) polarization free energy of solvation -62.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds