Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.33045 * 55.79738 * 4 3 2 6 6 C 1.54482 * 110.37682 * 178.16448 * 4 3 2 7 7 C 1.54503 * 104.06277 * 142.81212 * 6 4 3 8 8 C 1.54475 * 104.06583 * 359.97438 * 7 6 4 9 9 H 1.09005 * 110.37332 * 94.85525 * 8 7 6 10 10 C 1.50706 * 110.46931 * 217.14304 * 8 7 6 11 11 H 1.07997 * 119.99802 * 356.89022 * 10 8 7 12 12 C 1.37874 * 119.99828 * 176.88849 * 10 8 7 13 13 N 1.31515 * 120.00401 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99861 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47140 * 90.00219 * 14 12 10 16 16 H 1.48498 * 109.46978 * 210.00142 * 14 12 10 17 17 H 1.48497 * 109.46914 * 329.99965 * 14 12 10 18 18 O 1.44424 * 104.80550 * 336.02456 * 8 7 6 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.09002 * 110.51156 * 261.45808 * 6 4 3 27 27 H 1.08996 * 110.50819 * 24.16494 * 6 4 3 28 28 H 1.09008 * 110.51332 * 241.35807 * 7 6 4 29 29 H 1.08997 * 110.63194 * 118.70668 * 7 6 4 30 30 H 0.97004 * 120.00318 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9483 0.8682 -0.8462 6 6 4.1077 2.8900 -0.0470 7 6 5.3580 2.8552 0.8599 8 6 5.4275 1.3911 1.3475 9 1 6.0923 0.8095 0.7087 10 6 5.8948 1.3341 2.7792 11 1 6.1736 2.2423 3.2928 12 6 5.9663 0.1224 3.4332 13 7 5.6272 -0.9836 2.8076 14 14 6.5448 0.0517 5.2079 15 1 5.3773 0.1908 6.1150 16 1 7.2143 -1.2498 5.4588 17 1 7.5026 1.1580 5.4607 18 8 4.0728 0.9020 1.2409 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 4.3824 3.1630 -1.0660 27 1 3.3676 3.5852 0.3492 28 1 5.2362 3.5333 1.7047 29 1 6.2520 3.1117 0.2915 30 1 5.6772 -1.8361 3.2678 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307575879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = -72.501124 kcal Electronic energy + Delta-G solvation = -11541.682925 eV Core-core repulsion = 9529.008601 eV Total energy + Delta-G solvation = -2012.674323 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.16731 -34.31585 -32.41905 -30.76836 -29.23308 -26.22231 -23.52623 -21.15393 -20.16802 -19.69542 -16.61171 -15.36048 -14.73835 -14.42785 -13.93659 -13.57941 -12.98062 -12.44821 -12.14514 -11.84129 -11.55911 -11.40316 -10.89559 -10.73462 -10.54152 -10.39052 -10.09111 -9.95035 -9.70561 -9.53245 -9.02821 -8.55088 -7.99537 -5.97250 -4.09512 3.33496 3.39478 3.42206 4.45208 5.08085 5.27028 5.44911 5.51431 5.64473 5.74821 5.82784 5.94451 6.03450 6.20042 6.26111 6.31574 6.41787 6.49978 6.69879 6.75613 6.78463 6.87431 6.97509 6.99368 7.56775 7.92501 8.28439 8.61084 9.02735 9.60504 11.10710 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.041916 B = 0.012300 C = 0.010192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.847701 B = 2275.948276 C = 2746.609200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.105 4.105 4 C 0.062 3.938 5 H 0.046 0.954 6 C -0.150 4.150 7 C -0.147 4.147 8 C 0.205 3.795 9 H 0.022 0.978 10 C -0.530 4.530 11 H 0.063 0.937 12 C 0.076 3.924 13 N -0.864 5.864 14 Si 0.891 3.109 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 O -0.345 6.345 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 3.673 -5.188 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.143 4.143 4 C 0.003 3.997 5 H 0.064 0.936 6 C -0.188 4.188 7 C -0.185 4.185 8 C 0.150 3.850 9 H 0.040 0.960 10 C -0.568 4.568 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.500 5.500 14 Si 0.719 3.281 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 O -0.264 6.264 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.686 3.336 -5.022 8.288 hybrid contribution 0.390 0.057 0.746 0.844 sum -5.296 3.393 -4.276 7.606 Atomic orbital electron populations 1.21779 0.96862 1.00934 1.01052 1.21459 0.94440 0.97266 1.02825 1.21582 0.94724 0.96909 1.01088 1.22792 0.93432 0.92350 0.91126 0.93628 1.22953 0.98538 0.98173 0.99104 1.23034 0.95675 1.01668 0.98147 1.20486 0.81452 0.86578 0.96526 0.95989 1.21051 1.45077 0.93293 0.97350 0.91895 1.25081 0.94095 0.95737 0.98023 1.70044 1.45521 0.97948 1.36514 0.86620 0.78881 0.77425 0.85197 1.20492 1.21132 1.19768 1.89494 1.29745 1.72148 1.35060 0.93483 0.93262 0.93016 0.90552 0.92722 0.92453 0.91788 0.92615 0.92091 0.91919 0.92940 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -2.09 5.85 -26.73 -0.16 -2.25 16 3 C -0.11 -1.85 4.85 -26.74 -0.13 -1.98 16 4 C 0.06 1.30 3.28 -25.96 -0.09 1.21 16 5 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.15 -2.83 6.63 -25.16 -0.17 -3.00 16 7 C -0.15 -3.21 6.62 -25.17 -0.17 -3.38 16 8 C 0.21 5.51 3.11 -27.11 -0.08 5.42 16 9 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 10 C -0.53 -15.35 8.78 -34.44 -0.30 -15.65 16 11 H 0.06 1.76 7.60 -52.49 -0.40 1.36 16 12 C 0.08 2.21 5.42 -17.82 -0.10 2.12 16 13 N -0.86 -26.21 12.94 55.43 0.72 -25.50 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 18 O -0.35 -9.24 10.22 -35.23 -0.36 -9.60 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.08 1.54 7.91 -51.93 -0.41 1.13 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 28 H 0.06 1.37 7.73 -51.92 -0.40 0.97 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 249.30 15.07 3.76 3.76 Total: -1.00 -30.66 249.30 -6.71 -37.37 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.98 Total: -3.60 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -0.82 Total: -19.19 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.72 Total: -25.50 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.36 Total: -9.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.66 -6.71 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307575879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.136 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds