Wall clock time and date at job start Mon Mar 30 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.55048 * 303.57820 * 4 3 2 6 6 C 1.54994 * 110.61786 * 180.52613 * 4 3 2 7 7 C 1.54813 * 102.09012 * 204.47391 * 6 4 3 8 8 C 1.54104 * 104.18822 * 20.88416 * 7 6 4 9 9 H 1.09003 * 109.87763 * 242.60320 * 8 7 6 10 10 C 1.50695 * 110.00600 * 121.52057 * 8 7 6 11 11 H 1.08005 * 119.99797 * 0.64304 * 10 8 7 12 12 C 1.37875 * 120.00123 * 180.63959 * 10 8 7 13 13 N 1.31512 * 120.00109 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99895 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47366 * 90.00276 * 14 12 10 16 16 H 1.48497 * 109.46909 * 209.99874 * 14 12 10 17 17 H 1.48498 * 109.47265 * 329.99870 * 14 12 10 18 18 O 1.43750 * 107.29236 * 2.02422 * 8 7 6 19 19 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 23 23 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 26 26 H 1.08993 * 110.90826 * 322.67079 * 6 4 3 27 27 H 1.09001 * 110.90752 * 86.28410 * 6 4 3 28 28 H 1.09001 * 110.49012 * 262.20855 * 7 6 4 29 29 H 1.08995 * 110.60056 * 139.61390 * 7 6 4 30 30 H 0.96996 * 120.00477 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9530 0.8780 0.8495 6 6 4.1157 2.8933 0.0127 7 6 5.5192 2.7175 -0.6167 8 6 5.4233 1.3869 -1.3880 9 1 6.1250 0.6649 -0.9701 10 6 5.7288 1.6130 -2.8462 11 1 5.9793 2.6029 -3.1983 12 6 5.6884 0.5563 -3.7310 13 7 5.3839 -0.6490 -3.3022 14 14 6.0678 0.8366 -5.5385 15 1 7.5228 0.6544 -5.7730 16 1 5.3080 -0.1389 -6.3607 17 1 5.6742 2.2171 -5.9186 18 8 4.0778 0.9030 -1.2397 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.4946 3.5481 -0.5984 27 1 4.1913 3.2711 1.0323 28 1 6.2807 2.6540 0.1606 29 1 5.7391 3.5388 -1.2988 30 1 5.3552 -1.3924 -3.9247 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307575880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:34 Heat of formation + Delta-G solvation = -71.733734 kcal Electronic energy + Delta-G solvation = -11555.743853 eV Core-core repulsion = 9543.102806 eV Total energy + Delta-G solvation = -2012.641047 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.16451 -34.32699 -32.39901 -30.77542 -29.23328 -26.19507 -23.53647 -21.14926 -20.03346 -19.81013 -16.73407 -15.40659 -14.68330 -14.27202 -13.98283 -13.54769 -13.04648 -12.39362 -12.09931 -11.84990 -11.55970 -11.37389 -10.88909 -10.72926 -10.54825 -10.39366 -10.12355 -9.97099 -9.66012 -9.60815 -9.06485 -8.51370 -7.88337 -5.94913 -4.07369 3.33301 3.39857 3.43342 4.46507 5.05259 5.27461 5.45409 5.52694 5.64096 5.72811 5.83909 5.95603 6.02240 6.20807 6.26044 6.30821 6.40663 6.48661 6.73281 6.73767 6.76535 6.86674 6.96738 7.02368 7.62177 7.93744 8.32483 8.64457 9.07968 9.62802 11.12657 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040837 B = 0.012518 C = 0.010404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.483126 B = 2236.330436 C = 2690.697274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.106 4.106 4 C 0.063 3.937 5 H 0.046 0.954 6 C -0.147 4.147 7 C -0.147 4.147 8 C 0.203 3.797 9 H 0.023 0.977 10 C -0.532 4.532 11 H 0.061 0.939 12 C 0.076 3.924 13 N -0.864 5.864 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 O -0.346 6.346 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 3.244 5.993 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.143 4.143 4 C 0.005 3.995 5 H 0.063 0.937 6 C -0.185 4.185 7 C -0.185 4.185 8 C 0.148 3.852 9 H 0.041 0.959 10 C -0.570 4.570 11 H 0.079 0.921 12 C -0.129 4.129 13 N -0.500 5.500 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 O -0.266 6.266 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.398 2.912 5.792 8.436 hybrid contribution 0.328 0.243 -0.809 0.906 sum -5.070 3.156 4.983 7.778 Atomic orbital electron populations 1.21780 0.96845 1.00925 1.01084 1.21457 0.94496 0.97295 1.02733 1.21554 0.94681 0.96898 1.01175 1.22930 0.93417 0.92271 0.90929 0.93659 1.23088 0.97862 0.98123 0.99443 1.23044 0.95117 1.01490 0.98820 1.20258 0.81616 0.88226 0.95139 0.95944 1.21192 1.48403 0.94737 0.92668 0.92091 1.25079 0.93920 0.95152 0.98750 1.70040 1.45805 0.99490 1.34688 0.86647 0.78220 0.78150 0.85229 1.20587 1.21115 1.19807 1.89264 1.30483 1.71533 1.35281 0.93485 0.92974 0.93277 0.92791 0.90545 0.91683 0.92427 0.91597 0.92570 0.93333 0.91647 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -2.07 5.85 -26.73 -0.16 -2.23 16 3 C -0.11 -1.85 4.99 -26.73 -0.13 -1.98 16 4 C 0.06 1.32 3.33 -25.67 -0.09 1.23 16 5 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 6 C -0.15 -2.81 6.59 -24.72 -0.16 -2.97 16 7 C -0.15 -3.19 6.64 -25.20 -0.17 -3.35 16 8 C 0.20 5.46 3.25 -27.31 -0.09 5.37 16 9 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 10 C -0.53 -15.42 8.79 -34.44 -0.30 -15.72 16 11 H 0.06 1.71 7.34 -52.48 -0.39 1.32 16 12 C 0.08 2.23 5.41 -17.82 -0.10 2.13 16 13 N -0.86 -26.30 12.92 55.43 0.72 -25.59 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 O -0.35 -9.25 10.05 -35.23 -0.35 -9.61 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.54 7.92 -51.93 -0.41 1.13 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.41 7.41 -51.93 -0.38 1.02 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 249.04 15.07 3.75 3.75 Total: -1.00 -30.77 249.04 -6.69 -37.47 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.96 Total: -3.63 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -0.82 Total: -19.22 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.72 Total: -25.59 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.35 Total: -9.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.77 -6.69 -37.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307575880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.267 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds