Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 115.56357 * 2 1 4 4 C 1.53007 * 117.49739 * 145.68765 * 2 1 3 5 5 C 1.52995 * 117.49601 * 214.30944 * 2 1 3 6 6 H 1.08997 * 117.52437 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49841 * 145.02235 * 5 2 1 8 8 O 1.20824 * 119.99841 * 0.02562 * 7 5 2 9 9 O 1.34227 * 120.00293 * 180.02562 * 7 5 2 10 10 C 1.45202 * 117.00421 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47206 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00496 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99572 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 H 1.09003 * 109.47296 * 205.68888 * 1 2 3 20 20 H 1.09003 * 109.47275 * 325.68813 * 1 2 3 21 21 H 1.09002 * 109.47053 * 85.69205 * 1 2 3 22 22 H 1.08998 * 117.49414 * 0.02562 * 4 2 1 23 23 H 1.08993 * 117.51856 * 214.96933 * 4 2 1 24 24 H 1.09002 * 109.47124 * 59.99604 * 10 9 7 25 25 H 1.08998 * 109.46753 * 300.00470 * 10 9 7 26 26 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8589 -1.2680 7 6 3.5292 -0.7812 -1.4608 8 8 3.9703 0.3421 -1.4010 9 8 4.1907 -1.7263 -2.1470 10 6 5.4293 -1.3279 -2.7915 11 6 6.0264 -2.5117 -3.5077 12 1 5.5254 -3.4680 -3.4809 13 6 7.2124 -2.3738 -4.1973 14 7 7.8228 -1.2094 -4.2295 15 14 7.9522 -3.8410 -5.0857 16 1 6.9964 -4.3326 -6.1105 17 1 8.2296 -4.9236 -4.1078 18 1 9.2184 -3.4332 -5.7458 19 1 -0.3634 -0.9261 0.4455 20 1 -0.3634 0.8488 0.5793 21 1 -0.3633 0.0772 -1.0248 22 1 1.6111 -1.8587 1.2680 23 1 3.1716 -0.8756 1.2683 24 1 6.1307 -0.9673 -2.0390 25 1 5.2261 -0.5331 -3.5091 26 1 7.4384 -0.4473 -3.7684 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307630999.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = -82.053086 kcal Electronic energy + Delta-G solvation = -10784.375336 eV Core-core repulsion = 8635.453713 eV Total energy + Delta-G solvation = -2148.921622 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.86286 -37.28403 -35.41550 -33.14704 -29.00556 -27.41536 -24.42130 -22.57176 -20.94483 -19.59938 -17.35336 -17.09204 -15.77583 -15.46801 -14.17823 -13.87046 -13.69092 -13.16095 -12.54037 -12.47214 -12.31761 -11.89138 -11.47454 -10.84669 -10.79255 -10.36559 -10.15663 -10.11725 -9.80724 -9.79154 -8.81956 -8.49580 -6.57954 -4.30148 2.67241 3.35489 3.40762 3.43919 3.60508 3.86207 4.42521 4.72794 4.77859 4.97781 5.20462 5.23313 5.49891 5.63710 5.65148 5.73290 5.93331 6.01765 6.25746 6.60039 6.92010 7.31480 7.84017 8.20974 8.55644 8.70576 9.40408 10.81904 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.099476 B = 0.007766 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.407933 B = 3604.607071 C = 3747.495391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.163 4.163 6 H 0.131 0.869 7 C 0.479 3.521 8 O -0.525 6.525 9 O -0.347 6.347 10 C 0.195 3.805 11 C -0.610 4.610 12 H 0.066 0.934 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 1.084 2.916 16 H -0.284 1.284 17 H -0.284 1.284 18 H -0.279 1.279 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 -0.807 7.333 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.182 4.182 6 H 0.149 0.851 7 C 0.322 3.678 8 O -0.416 6.416 9 O -0.262 6.262 10 C 0.124 3.876 11 C -0.648 4.648 12 H 0.084 0.916 13 C -0.183 4.183 14 N -0.538 5.538 15 Si 0.910 3.090 16 H -0.210 1.210 17 H -0.210 1.210 18 H -0.204 1.204 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.125 0.875 23 H 0.118 0.882 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.257 -0.969 6.382 12.119 hybrid contribution -1.174 0.629 0.884 1.599 sum -11.432 -0.340 7.266 13.550 Atomic orbital electron populations 1.21393 0.92070 1.02140 1.02273 1.22461 0.95314 0.95197 1.01534 0.86473 1.23137 1.03123 1.01254 0.90933 1.21835 0.95856 1.05103 0.95413 0.85097 1.22462 0.85054 0.83431 0.76865 1.90587 1.68213 1.22965 1.59832 1.86458 1.38492 1.40822 1.60434 1.20992 0.77424 0.97655 0.91545 1.21873 1.10210 0.96694 1.36005 0.91581 1.26029 0.93601 1.02676 0.96020 1.70781 1.40738 1.01086 1.41194 0.83343 0.76230 0.73406 0.76048 1.21039 1.21036 1.20450 0.92258 0.91699 0.91848 0.87497 0.88186 0.96356 0.96314 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.19 37.16 0.38 -0.78 15 2 C -0.13 -1.64 5.92 -90.62 -0.54 -2.17 15 3 H 0.12 1.68 7.67 -51.93 -0.40 1.28 15 4 C -0.15 -1.86 9.88 -26.73 -0.26 -2.13 15 5 C -0.16 -2.55 6.02 -91.77 -0.55 -3.11 15 6 H 0.13 1.80 8.14 -51.93 -0.42 1.38 15 7 C 0.48 10.45 7.74 36.01 0.28 10.73 15 8 O -0.53 -12.74 16.01 -18.75 -0.30 -13.04 15 9 O -0.35 -8.77 10.20 -39.25 -0.40 -9.17 15 10 C 0.20 5.59 4.53 36.00 0.16 5.75 15 11 C -0.61 -18.18 9.44 -34.44 -0.33 -18.51 15 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 15 13 C 0.02 0.62 5.46 -17.82 -0.10 0.52 15 14 N -0.90 -27.97 13.65 55.43 0.76 -27.22 15 15 Si 1.08 25.15 29.90 -169.99 -5.08 20.06 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 19 H 0.06 0.49 7.90 -51.93 -0.41 0.08 15 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.11 1.05 8.05 -51.93 -0.42 0.63 15 23 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.02 0.55 8.00 -51.93 -0.42 0.13 15 25 H 0.02 0.56 8.00 -51.93 -0.42 0.15 15 26 H 0.27 8.44 7.22 -40.82 -0.29 8.14 15 LS Contribution 237.49 15.07 3.58 3.58 Total: -1.00 -33.04 237.49 -5.65 -38.69 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.25 Total: -3.21 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.96 Total: -9.70 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.76 Total: -27.22 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.70 Total: -22.22 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.04 -5.65 -38.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630999.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.359 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds