Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 115.56357 * 2 1 4 4 C 1.53007 * 117.49739 * 145.68765 * 2 1 3 5 5 C 1.52995 * 117.49601 * 214.30944 * 2 1 3 6 6 H 1.08997 * 117.52437 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49841 * 145.02235 * 5 2 1 8 8 O 1.20824 * 119.99841 * 0.02562 * 7 5 2 9 9 O 1.34227 * 120.00293 * 180.02562 * 7 5 2 10 10 C 1.45202 * 117.00421 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47206 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00496 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99572 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 H 1.09003 * 109.47296 * 205.68888 * 1 2 3 20 20 H 1.09003 * 109.47275 * 325.68813 * 1 2 3 21 21 H 1.09002 * 109.47053 * 85.69205 * 1 2 3 22 22 H 1.08998 * 117.49414 * 0.02562 * 4 2 1 23 23 H 1.08993 * 117.51856 * 214.96933 * 4 2 1 24 24 H 1.09002 * 109.47124 * 59.99604 * 10 9 7 25 25 H 1.08998 * 109.46753 * 300.00470 * 10 9 7 26 26 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8589 -1.2680 7 6 3.5292 -0.7812 -1.4608 8 8 3.9703 0.3421 -1.4010 9 8 4.1907 -1.7263 -2.1470 10 6 5.4293 -1.3279 -2.7915 11 6 6.0264 -2.5117 -3.5077 12 1 5.5254 -3.4680 -3.4809 13 6 7.2124 -2.3738 -4.1973 14 7 7.8228 -1.2094 -4.2295 15 14 7.9522 -3.8410 -5.0857 16 1 6.9964 -4.3326 -6.1105 17 1 8.2296 -4.9236 -4.1078 18 1 9.2184 -3.4332 -5.7458 19 1 -0.3634 -0.9261 0.4455 20 1 -0.3634 0.8488 0.5793 21 1 -0.3633 0.0772 -1.0248 22 1 1.6111 -1.8587 1.2680 23 1 3.1716 -0.8756 1.2683 24 1 6.1307 -0.9673 -2.0390 25 1 5.2261 -0.5331 -3.5091 26 1 7.4384 -0.4473 -3.7684 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307630999.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = -102.983408 kcal Electronic energy + Delta-G solvation = -10785.282942 eV Core-core repulsion = 8635.453713 eV Total energy + Delta-G solvation = -2149.829229 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.62572 -38.69792 -37.25386 -35.41934 -30.23545 -29.30922 -26.11732 -24.59463 -22.12649 -21.07981 -19.42508 -18.91710 -17.60000 -17.36157 -15.72315 -15.37420 -15.12299 -14.80223 -14.43986 -14.15676 -13.73360 -13.04636 -12.90402 -12.68818 -12.41493 -11.91237 -11.90348 -11.69451 -11.38368 -11.19110 -10.98999 -10.73314 -8.96629 -6.72062 0.98799 1.51484 1.61488 1.73612 1.84380 2.49380 2.67996 2.92421 3.56910 3.65020 3.74453 4.06403 4.29640 4.33901 4.53904 4.65694 4.79542 4.90160 4.97731 5.15152 5.25315 5.37769 5.62936 5.93474 6.17160 6.71684 7.10764 8.43075 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.099476 B = 0.007766 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.407933 B = 3604.607071 C = 3747.495391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.128 4.128 5 C -0.184 4.184 6 H 0.155 0.845 7 C 0.470 3.530 8 O -0.558 6.558 9 O -0.356 6.356 10 C 0.204 3.796 11 C -0.632 4.632 12 H 0.071 0.929 13 C -0.026 4.026 14 N -0.922 5.922 15 Si 1.137 2.863 16 H -0.262 1.262 17 H -0.261 1.261 18 H -0.277 1.277 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.148 0.852 23 H 0.088 0.912 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 -2.477 7.908 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.134 4.134 3 H 0.114 0.886 4 C -0.164 4.164 5 C -0.203 4.203 6 H 0.173 0.827 7 C 0.316 3.684 8 O -0.450 6.450 9 O -0.271 6.271 10 C 0.132 3.868 11 C -0.669 4.669 12 H 0.089 0.911 13 C -0.224 4.224 14 N -0.557 5.557 15 Si 0.953 3.047 16 H -0.186 1.186 17 H -0.186 1.186 18 H -0.202 1.202 19 H 0.100 0.900 20 H 0.099 0.901 21 H 0.082 0.918 22 H 0.166 0.834 23 H 0.106 0.894 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.790 -2.621 6.989 13.954 hybrid contribution -0.770 1.245 0.786 1.661 sum -12.559 -1.375 7.775 14.835 Atomic orbital electron populations 1.21434 0.88859 1.04093 1.02949 1.22619 0.97515 0.93700 0.99587 0.88598 1.23372 1.03158 1.01656 0.88260 1.22017 0.93031 1.08120 0.97140 0.82720 1.23808 0.86318 0.82496 0.75814 1.90561 1.69485 1.24162 1.60833 1.86462 1.37420 1.42068 1.61195 1.20587 0.78681 0.96917 0.90616 1.22221 1.11000 0.97041 1.36625 0.91053 1.27907 0.93858 1.04666 0.95974 1.70921 1.41237 1.01585 1.41975 0.82742 0.75881 0.70203 0.75843 1.18615 1.18588 1.20175 0.90033 0.90101 0.91757 0.83394 0.89380 0.98621 0.98631 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 10.19 71.98 0.73 -1.06 15 2 C -0.12 -2.76 5.92 -10.79 -0.06 -2.82 15 3 H 0.10 2.71 7.67 -2.39 -0.02 2.69 15 4 C -0.13 -2.88 9.88 30.60 0.30 -2.58 15 5 C -0.18 -5.51 6.02 -11.54 -0.07 -5.58 15 6 H 0.16 3.87 8.14 -2.39 -0.02 3.85 15 7 C 0.47 20.95 7.74 71.24 0.55 21.50 15 8 O -0.56 -28.22 16.01 21.97 0.35 -27.86 15 9 O -0.36 -18.47 10.20 -51.38 -0.52 -18.99 15 10 C 0.20 12.20 4.53 71.23 0.32 12.52 15 11 C -0.63 -38.23 9.44 25.60 0.24 -37.99 15 12 H 0.07 4.15 7.81 -2.91 -0.02 4.13 15 13 C -0.03 -1.54 5.46 84.66 0.46 -1.08 15 14 N -0.92 -58.27 13.65 21.45 0.29 -57.98 15 15 Si 1.14 49.40 29.90 68.60 2.05 51.45 15 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 17 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 19 H 0.08 0.94 7.90 -2.39 -0.02 0.92 15 20 H 0.08 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.15 2.17 8.05 -2.39 -0.02 2.15 15 23 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 24 H 0.00 -0.25 8.00 -2.39 -0.02 -0.27 15 25 H 0.00 -0.26 8.00 -2.39 -0.02 -0.28 15 26 H 0.25 16.54 7.22 -92.70 -0.67 15.87 15 Total: -1.00 -73.62 237.49 5.91 -67.71 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.26 Total: 2.76 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 2.48 Total: -17.08 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.29 Total: -57.98 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.17 Total: -46.86 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -73.62 5.91 -67.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630999.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.273 kcal (2) G-P(sol) polarization free energy of solvation -73.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds