Wall clock time and date at job start Mon Mar 30 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 115.56647 * 2 1 4 4 C 1.53001 * 117.50022 * 214.30970 * 2 1 3 5 5 C 1.53004 * 60.00155 * 252.50846 * 4 2 1 6 6 H 1.08995 * 117.49132 * 107.51279 * 5 4 2 7 7 C 1.50697 * 117.50121 * 252.50688 * 5 4 2 8 8 O 1.20830 * 119.99665 * 68.60994 * 7 5 4 9 9 O 1.34226 * 119.99938 * 248.60791 * 7 5 4 10 10 C 1.45206 * 116.99678 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00083 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46986 * 270.00126 * 15 13 11 17 17 H 1.48496 * 109.47029 * 30.00143 * 15 13 11 18 18 H 1.48499 * 109.47352 * 149.99973 * 15 13 11 19 19 H 1.08999 * 109.47572 * 274.31104 * 1 2 3 20 20 H 1.09002 * 109.47176 * 34.31311 * 1 2 3 21 21 H 1.09001 * 109.47108 * 154.30791 * 1 2 3 22 22 H 1.09010 * 117.49864 * 145.02277 * 4 2 1 23 23 H 1.08999 * 117.50129 * 0.02562 * 4 2 1 24 24 H 1.08994 * 109.47086 * 60.00579 * 10 9 7 25 25 H 1.08998 * 109.47578 * 300.00228 * 10 9 7 26 26 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7651 6 1 1.6115 -1.8587 1.2682 7 6 3.5292 -0.7811 1.4609 8 8 3.9701 0.3423 1.4013 9 8 4.1908 -1.7263 2.1469 10 6 5.4294 -1.3277 2.7914 11 6 6.0266 -2.5116 3.5074 12 1 5.5256 -3.4680 3.4805 13 6 7.2126 -2.3738 4.1970 14 7 7.8224 -1.2091 4.2302 15 14 7.9533 -3.8415 5.0840 16 1 7.4376 -3.8906 6.4757 17 1 7.5789 -5.0902 4.3729 18 1 9.4323 -3.7103 5.1085 19 1 -0.3634 0.0772 1.0247 20 1 -0.3634 0.8488 -0.5793 21 1 -0.3633 -0.9261 -0.4455 22 1 3.1716 -0.8751 -1.2683 23 1 1.6112 -1.8583 -1.2686 24 1 5.2261 -0.5332 3.5092 25 1 6.1307 -0.9669 2.0390 26 1 7.4379 -0.4470 3.7693 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307631001.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:21 Heat of formation + Delta-G solvation = -103.047401 kcal Electronic energy + Delta-G solvation = -10785.383906 eV Core-core repulsion = 8635.551903 eV Total energy + Delta-G solvation = -2149.832004 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.62484 -38.69758 -37.25319 -35.41997 -30.23582 -29.30952 -26.11844 -24.59612 -22.12565 -21.07934 -19.42475 -18.91668 -17.60028 -17.36168 -15.73234 -15.37444 -15.12166 -14.79741 -14.43977 -14.15688 -13.73300 -13.04651 -12.90398 -12.69731 -12.41506 -11.91196 -11.90140 -11.69600 -11.38356 -11.18949 -10.98745 -10.73669 -8.96796 -6.72146 0.98769 1.51227 1.61803 1.73194 1.83895 2.48873 2.68001 2.92393 3.56931 3.64991 3.74480 4.06395 4.29650 4.33911 4.53908 4.65706 4.79518 4.90153 4.97724 5.15149 5.25240 5.37784 5.62860 5.93645 6.17303 6.71681 7.10677 8.42977 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.099477 B = 0.007766 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.405263 B = 3604.621378 C = 3747.553519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.128 4.128 5 C -0.184 4.184 6 H 0.155 0.845 7 C 0.470 3.530 8 O -0.558 6.558 9 O -0.356 6.356 10 C 0.204 3.796 11 C -0.631 4.631 12 H 0.071 0.929 13 C -0.026 4.026 14 N -0.922 5.922 15 Si 1.139 2.861 16 H -0.264 1.264 17 H -0.262 1.262 18 H -0.275 1.275 19 H 0.063 0.937 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.148 0.852 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 -2.444 -7.882 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.134 4.134 3 H 0.114 0.886 4 C -0.165 4.165 5 C -0.203 4.203 6 H 0.173 0.827 7 C 0.316 3.684 8 O -0.450 6.450 9 O -0.271 6.271 10 C 0.132 3.868 11 C -0.668 4.668 12 H 0.089 0.911 13 C -0.224 4.224 14 N -0.558 5.558 15 Si 0.956 3.044 16 H -0.189 1.189 17 H -0.187 1.187 18 H -0.200 1.200 19 H 0.082 0.918 20 H 0.099 0.901 21 H 0.100 0.900 22 H 0.106 0.894 23 H 0.166 0.834 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.786 -2.589 -6.966 13.933 hybrid contribution -0.768 1.247 -0.778 1.658 sum -12.553 -1.342 -7.744 14.811 Atomic orbital electron populations 1.21432 0.88861 1.04092 1.02951 1.22620 0.97513 0.93701 0.99588 0.88596 1.23372 1.03158 1.01658 0.88262 1.22017 0.93033 1.08122 0.97137 0.82724 1.23806 0.86315 0.82498 0.75813 1.90563 1.69494 1.24150 1.60832 1.86464 1.37418 1.42058 1.61203 1.20592 0.78687 0.96920 0.90626 1.22241 1.10949 0.97023 1.36611 0.91097 1.27903 0.93855 1.04677 0.95977 1.70893 1.41277 1.01570 1.42019 0.82707 0.75699 0.70275 0.75718 1.18938 1.18678 1.20044 0.91755 0.90101 0.90036 0.89383 0.83393 0.98615 0.98600 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 10.19 71.98 0.73 -1.07 15 2 C -0.12 -2.76 5.92 -10.79 -0.06 -2.82 15 3 H 0.10 2.71 7.67 -2.39 -0.02 2.69 15 4 C -0.13 -2.88 9.88 30.60 0.30 -2.58 15 5 C -0.18 -5.51 6.02 -11.54 -0.07 -5.58 15 6 H 0.16 3.87 8.14 -2.39 -0.02 3.85 15 7 C 0.47 20.95 7.74 71.24 0.55 21.50 15 8 O -0.56 -28.21 16.01 21.95 0.35 -27.86 15 9 O -0.36 -18.47 10.20 -51.38 -0.52 -19.00 15 10 C 0.20 12.18 4.53 71.24 0.32 12.51 15 11 C -0.63 -38.21 9.44 25.60 0.24 -37.96 15 12 H 0.07 4.14 7.81 -2.91 -0.02 4.12 15 13 C -0.03 -1.55 5.46 84.65 0.46 -1.09 15 14 N -0.92 -58.25 13.65 21.45 0.29 -57.95 15 15 Si 1.14 49.53 29.90 68.60 2.05 51.58 15 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 17 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 15 19 H 0.06 1.01 8.14 -2.39 -0.02 0.99 15 20 H 0.08 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.08 0.94 7.90 -2.39 -0.02 0.92 15 22 H 0.09 2.22 8.14 -2.38 -0.02 2.20 15 23 H 0.15 2.17 8.05 -2.39 -0.02 2.15 15 24 H 0.00 -0.25 8.00 -2.39 -0.02 -0.27 15 25 H 0.00 -0.24 8.00 -2.39 -0.02 -0.26 15 26 H 0.25 16.55 7.22 -92.70 -0.67 15.88 15 Total: -1.00 -73.54 237.49 5.91 -67.63 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.26 Total: 2.68 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 2.48 Total: -17.09 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.29 Total: -57.95 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.17 Total: -46.86 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Total: -73.54 5.91 -67.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307631001.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.413 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds