Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55766 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31684 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.08999 * 117.49959 * 252.49451 * 5 4 2 7 7 C 1.50701 * 117.49727 * 107.49982 * 5 4 2 8 8 O 1.20827 * 120.00674 * 291.39539 * 7 5 4 9 9 O 1.34231 * 119.99785 * 111.38938 * 7 5 4 10 10 C 1.45204 * 117.00053 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.47101 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00065 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99825 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99972 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46821 * 60.00655 * 15 13 11 17 17 H 1.48502 * 109.47351 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47365 * 300.00379 * 15 13 11 19 19 H 1.09005 * 109.47034 * 154.29268 * 1 2 3 20 20 H 1.08996 * 109.47323 * 274.29157 * 1 2 3 21 21 H 1.08997 * 109.47719 * 34.29727 * 1 2 3 22 22 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 23 23 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 24 24 H 1.08998 * 109.47159 * 300.00148 * 10 9 7 25 25 H 1.08999 * 109.47327 * 60.00203 * 10 9 7 26 26 H 0.97002 * 120.00058 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 3.1720 -0.8767 1.2681 7 6 1.3725 -2.1420 1.4602 8 8 0.1688 -2.0553 1.4009 9 8 1.9400 -3.1471 2.1454 10 6 1.0463 -4.0930 2.7895 11 6 1.8569 -5.1423 3.5058 12 1 2.9358 -5.1025 3.4792 13 6 1.2210 -6.1531 4.1950 14 7 -0.0929 -6.2018 4.2268 15 14 2.2257 -7.4542 5.0822 16 1 3.0819 -6.8047 6.1071 17 1 1.3116 -8.4215 5.7410 18 1 3.0822 -8.1709 4.1035 19 1 -0.3633 -0.9260 -0.4458 20 1 -0.3634 0.0769 1.0247 21 1 -0.3634 0.8489 -0.5790 22 1 3.1715 -0.8751 -1.2684 23 1 1.6112 -1.8581 -1.2688 24 1 0.4172 -3.5673 3.5078 25 1 0.4181 -4.5697 2.0370 26 1 -0.5402 -6.9132 4.7114 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307631002.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = -93.979556 kcal Electronic energy + Delta-G solvation = -10924.064494 eV Core-core repulsion = 8774.625702 eV Total energy + Delta-G solvation = -2149.438793 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.51380 -38.58364 -36.89642 -35.07722 -30.38960 -29.44699 -26.26221 -24.34029 -22.14822 -20.93549 -18.84219 -18.50655 -17.35811 -17.07380 -16.34162 -15.98707 -14.68332 -14.41736 -14.11456 -13.85664 -13.44518 -13.26253 -13.02253 -12.79303 -12.41256 -12.21319 -11.71533 -11.59255 -11.29274 -11.20597 -10.87354 -10.71397 -8.41479 -6.59201 1.18191 1.38934 1.45389 1.53674 1.93507 2.37443 2.77277 2.92685 3.59708 3.80704 3.92556 4.16504 4.43917 4.64494 4.78084 4.85335 4.87237 4.93608 5.00789 5.14458 5.35941 5.50635 5.67146 5.96410 6.51148 6.90906 7.14469 8.70979 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.094482 B = 0.008404 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.283045 B = 3330.956479 C = 3540.571225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.108 4.108 3 H 0.155 0.845 4 C -0.132 4.132 5 C -0.188 4.188 6 H 0.155 0.845 7 C 0.466 3.534 8 O -0.546 6.546 9 O -0.365 6.365 10 C 0.220 3.780 11 C -0.559 4.559 12 H 0.077 0.923 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.997 3.003 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.260 1.260 19 H 0.037 0.963 20 H 0.042 0.958 21 H 0.081 0.919 22 H 0.147 0.853 23 H 0.085 0.915 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 9.647 -7.493 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.126 4.126 3 H 0.173 0.827 4 C -0.168 4.168 5 C -0.206 4.206 6 H 0.173 0.827 7 C 0.312 3.688 8 O -0.438 6.438 9 O -0.282 6.282 10 C 0.148 3.852 11 C -0.597 4.597 12 H 0.096 0.904 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.818 3.182 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.185 1.185 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.100 0.900 22 H 0.165 0.835 23 H 0.104 0.896 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.706 9.534 -7.421 13.361 hybrid contribution -0.373 -0.899 0.695 1.196 sum 5.333 8.634 -6.726 12.175 Atomic orbital electron populations 1.21385 0.93159 1.01462 1.01403 1.22706 0.95514 0.94896 0.99456 0.82703 1.23315 1.04435 1.00610 0.88484 1.22021 1.02454 0.99089 0.97078 0.82741 1.23717 0.87763 0.81200 0.76132 1.90590 1.17843 1.75066 1.60308 1.86438 1.43450 1.36854 1.61408 1.20426 0.88867 0.85384 0.90572 1.21328 0.94582 1.10122 1.33622 0.90443 1.26143 0.96450 1.00191 0.96454 1.70111 1.09777 1.34556 1.42434 0.85027 0.77836 0.76864 0.78425 1.18455 1.20018 1.18459 0.94349 0.93888 0.90011 0.83495 0.89648 0.98364 0.98377 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 8.43 71.98 0.61 -2.63 15 2 C -0.11 -2.46 6.41 -10.77 -0.07 -2.53 15 3 H 0.16 2.29 8.14 -2.39 -0.02 2.27 15 4 C -0.13 -2.93 9.88 30.60 0.30 -2.63 15 5 C -0.19 -5.51 6.30 -11.52 -0.07 -5.58 15 6 H 0.15 3.75 8.14 -2.39 -0.02 3.73 15 7 C 0.47 20.57 7.72 71.24 0.55 21.12 15 8 O -0.55 -26.96 12.87 21.96 0.28 -26.68 15 9 O -0.37 -18.84 10.20 -51.43 -0.52 -19.37 15 10 C 0.22 13.18 5.22 71.24 0.37 13.55 15 11 C -0.56 -33.54 9.44 25.60 0.24 -33.30 15 12 H 0.08 4.42 7.81 -2.91 -0.02 4.40 15 13 C 0.01 0.40 5.46 84.65 0.46 0.86 15 14 N -0.93 -57.19 13.29 21.45 0.28 -56.91 15 15 Si 1.00 43.78 29.54 68.60 2.03 45.81 15 16 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 18 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 19 H 0.04 1.24 7.02 -2.38 -0.02 1.22 15 20 H 0.04 1.40 7.26 -2.39 -0.02 1.39 15 21 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.15 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.08 2.18 8.05 -2.39 -0.02 2.16 15 24 H 0.00 -0.10 8.13 -2.39 -0.02 -0.12 15 25 H 0.00 -0.11 8.13 -2.39 -0.02 -0.13 15 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 Total: -1.00 -71.60 233.37 5.62 -65.98 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.16 Total: 2.30 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 2.39 Total: -11.14 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.24 Total: -46.04 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.60 5.62 -65.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307631002.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.996 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds