Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 5 5 H 1.07998 * 119.99604 * 119.99819 * 4 2 1 6 6 C 1.37872 * 119.99932 * 299.99681 * 4 2 1 7 7 N 1.31517 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47057 * 119.99488 * 8 6 4 11 11 H 1.48502 * 109.47399 * 240.00156 * 8 6 4 12 12 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 13 13 C 1.34234 * 116.99938 * 90.00275 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 C 1.53003 * 117.49893 * 248.75171 * 15 13 12 17 17 C 1.52992 * 117.49949 * 180.09112 * 15 13 12 18 18 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 19 19 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 21 21 H 0.96995 * 120.00188 * 179.97438 * 7 6 4 22 22 H 1.09000 * 115.54983 * 34.41504 * 15 13 12 23 23 H 1.09000 * 117.49955 * 359.97438 * 16 15 13 24 24 H 1.08993 * 117.50271 * 145.01842 * 16 15 13 25 25 H 1.09007 * 117.49863 * 214.97660 * 17 15 13 26 26 H 1.09002 * 117.50278 * 359.96865 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1466 -0.1875 4.8165 11 1 1.1659 -1.5866 4.8161 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7193 -0.5771 -3.5492 16 6 4.1384 -0.2289 -4.0028 17 6 2.9328 0.3299 -4.7627 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.7082 1.1609 3.4844 22 1 2.3663 -1.5914 -3.7349 23 1 4.7087 0.4642 -3.3843 24 1 4.7189 -1.0140 -4.4873 25 1 2.7206 -0.0880 -5.7468 26 1 2.7096 1.3902 -4.6441 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307636972.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -91.102121 kcal Electronic energy + Delta-G solvation = -11098.104229 eV Core-core repulsion = 8948.790212 eV Total energy + Delta-G solvation = -2149.314018 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.42167 -38.28332 -36.80586 -35.35075 -31.74389 -27.51574 -26.39126 -23.37019 -22.98857 -21.00847 -18.96097 -18.59334 -17.48930 -16.85048 -16.42421 -15.61916 -15.02737 -14.35878 -14.12288 -13.53215 -13.24039 -12.99096 -12.84706 -12.46128 -12.42689 -12.15693 -11.65743 -11.62616 -11.52530 -11.30396 -11.01377 -10.62998 -8.31375 -6.49000 1.20128 1.40973 1.42212 1.56214 1.97627 2.40272 2.86005 2.99326 3.71191 3.87174 3.97335 4.21335 4.49129 4.70771 4.73783 4.78036 4.87733 5.00605 5.14164 5.20336 5.45723 5.58975 5.88477 6.05597 6.56835 6.94914 7.23560 8.76924 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.071682 B = 0.009969 C = 0.009297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.520033 B = 2808.147088 C = 3010.953302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.270 1.270 12 O -0.362 6.362 13 C 0.469 3.531 14 O -0.560 6.560 15 C -0.189 4.189 16 C -0.137 4.137 17 C -0.136 4.136 18 H 0.022 0.978 19 H 0.047 0.953 20 H 0.082 0.918 21 H 0.272 0.728 22 H 0.156 0.844 23 H 0.083 0.917 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -4.470 -9.950 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.195 1.195 12 O -0.278 6.278 13 C 0.315 3.685 14 O -0.452 6.452 15 C -0.207 4.207 16 C -0.173 4.173 17 C -0.173 4.173 18 H 0.041 0.959 19 H 0.066 0.934 20 H 0.101 0.899 21 H 0.081 0.919 22 H 0.174 0.826 23 H 0.102 0.898 24 H 0.164 0.836 25 H 0.163 0.837 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.871 -4.011 -9.757 11.237 hybrid contribution -0.128 0.201 1.061 1.088 sum 3.743 -3.810 -8.695 10.205 Atomic orbital electron populations 1.21984 0.96670 1.00488 1.00812 1.20387 0.92163 0.92019 0.79337 0.97726 1.21333 1.33518 1.13936 0.89935 0.91427 1.25886 0.94634 0.95664 1.02264 1.70027 1.36572 1.23739 1.25272 0.85075 0.78379 0.78384 0.77187 1.18655 1.20011 1.19509 1.86466 1.76022 1.43814 1.21471 1.23640 0.73446 0.85244 0.86157 1.90554 1.50653 1.18675 1.85321 1.21916 1.05265 1.03201 0.90347 1.23177 0.88595 1.03881 1.01692 1.23196 1.00167 0.98953 0.94944 0.95891 0.93384 0.89949 0.91903 0.82596 0.89789 0.83571 0.83661 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.59 9.33 71.98 0.67 -6.92 15 2 C 0.21 12.29 2.56 29.85 0.08 12.37 15 3 H 0.00 0.32 7.16 -2.39 -0.02 0.30 15 4 C -0.55 -32.12 8.90 25.60 0.23 -31.90 15 5 H 0.07 3.87 7.81 -2.91 -0.02 3.85 15 6 C 0.02 0.85 5.30 84.65 0.45 1.29 15 7 N -0.92 -53.68 11.32 21.45 0.24 -53.44 15 8 Si 0.99 43.35 29.54 68.60 2.03 45.38 15 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 12 O -0.36 -18.39 9.86 -51.46 -0.51 -18.89 15 13 C 0.47 20.87 7.71 71.24 0.55 21.42 15 14 O -0.56 -28.44 15.48 21.98 0.34 -28.10 15 15 C -0.19 -5.58 6.30 -11.54 -0.07 -5.65 15 16 C -0.14 -3.11 10.24 30.62 0.31 -2.80 15 17 C -0.14 -3.10 10.05 30.62 0.31 -2.79 15 18 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 19 H 0.05 2.40 8.14 -2.39 -0.02 2.38 15 20 H 0.08 4.69 6.07 -2.39 -0.01 4.67 15 21 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 22 H 0.16 3.76 8.14 -2.39 -0.02 3.74 15 23 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.15 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.15 2.12 8.14 -2.38 -0.02 2.10 15 26 H 0.09 2.38 7.67 -2.39 -0.02 2.36 15 Total: -1.00 -69.06 233.77 5.78 -63.27 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.16 Total: 6.76 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 2.52 Total: -14.97 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.24 Total: -53.44 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.17 Total: -47.00 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -69.06 5.78 -63.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307636972.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.832 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds