Wall clock time and date at job start Mon Mar 30 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 5 5 C 1.53000 * 60.00347 * 107.48485 * 4 2 1 6 6 H 1.08990 * 117.49990 * 252.50929 * 5 4 2 7 7 C 1.52998 * 117.49463 * 107.48750 * 5 4 2 8 8 C 1.50701 * 109.46975 * 116.37972 * 7 5 4 9 9 O 1.21209 * 119.99983 * 0.02562 * 8 7 5 10 10 O 1.34308 * 120.00250 * 179.97438 * 8 7 5 11 11 C 1.34924 * 117.00149 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99705 * 0.02562 * 11 10 8 13 13 C 1.38753 * 119.99813 * 180.02562 * 11 10 8 14 14 N 1.31440 * 120.00470 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99920 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46740 * 60.00126 * 15 13 11 17 17 H 1.48493 * 109.47152 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47224 * 300.00358 * 15 13 11 19 19 H 1.09000 * 109.47531 * 205.66829 * 1 2 3 20 20 H 1.09004 * 109.47098 * 325.66994 * 1 2 3 21 21 H 1.08998 * 109.47654 * 85.66462 * 1 2 3 22 22 H 1.09002 * 117.49910 * 359.97438 * 4 2 1 23 23 H 1.09002 * 117.49884 * 214.98139 * 4 2 1 24 24 H 1.09000 * 109.47131 * 236.37968 * 7 5 4 25 25 H 1.09001 * 109.47579 * 356.38538 * 7 5 4 26 26 H 0.97000 * 120.00429 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 0.7645 5 6 2.2363 -1.1207 -0.7655 6 1 1.6111 -1.8580 -1.2690 7 6 3.5489 -0.7754 -1.4718 8 6 4.0216 -1.9669 -2.2642 9 8 3.3727 -2.9907 -2.2643 10 8 5.1613 -1.8942 -2.9710 11 6 5.5272 -2.9961 -3.6583 12 1 4.9119 -3.8829 -3.6241 13 6 6.6940 -2.9897 -4.4092 14 7 7.4432 -1.9104 -4.4504 15 14 7.2003 -4.5149 -5.3614 16 1 6.1423 -4.8579 -6.3454 17 1 8.4745 -4.2515 -6.0769 18 1 7.3860 -5.6477 -4.4193 19 1 -0.3634 -0.9262 0.4451 20 1 -0.3633 0.8487 0.5796 21 1 -0.3634 0.0777 -1.0247 22 1 1.6112 -1.8588 1.2678 23 1 3.1715 -0.8756 1.2679 24 1 3.3889 0.0677 -2.1440 25 1 4.3021 -0.5106 -0.7298 26 1 8.2591 -1.9061 -4.9750 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307639373.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:01 Heat of formation + Delta-G solvation = -71.333426 kcal Electronic energy + Delta-G solvation = -10801.503504 eV Core-core repulsion = 8653.046721 eV Total energy + Delta-G solvation = -2148.456783 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.06988 -37.54080 -34.99852 -32.09370 -30.20797 -27.50190 -25.10262 -21.59059 -20.36487 -19.39954 -17.65740 -16.41603 -15.23591 -14.74764 -14.48557 -14.14965 -13.64578 -13.04088 -12.46394 -12.16774 -12.06450 -11.53567 -11.26707 -11.07909 -10.99585 -10.44123 -10.31240 -9.78425 -9.74243 -9.51942 -8.92302 -8.52728 -6.35941 -4.03863 3.16933 3.21269 3.25584 3.61005 3.88448 4.05694 4.54894 5.00556 5.06484 5.18217 5.21448 5.41132 5.69759 5.83400 5.84802 5.98983 6.04943 6.06921 6.16341 6.38517 6.66647 6.90722 7.44681 8.01352 8.78810 9.13049 9.93149 10.82387 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.103137 B = 0.008008 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.418078 B = 3495.458539 C = 3622.075603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.160 4.160 3 H 0.103 0.897 4 C -0.176 4.176 5 C -0.130 4.130 6 H 0.117 0.883 7 C -0.075 4.075 8 C 0.400 3.600 9 O -0.557 6.557 10 O -0.218 6.218 11 C -0.382 4.382 12 H 0.094 0.906 13 C 0.041 3.959 14 N -0.868 5.868 15 Si 0.943 3.057 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.270 1.270 19 H 0.054 0.946 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 3.593 6.299 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 H 0.121 0.879 4 C -0.213 4.213 5 C -0.148 4.148 6 H 0.135 0.865 7 C -0.112 4.112 8 C 0.247 3.753 9 O -0.454 6.454 10 O -0.125 6.125 11 C -0.459 4.459 12 H 0.112 0.888 13 C -0.163 4.163 14 N -0.505 5.505 15 Si 0.768 3.232 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.195 1.195 19 H 0.073 0.927 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.581 3.406 6.186 10.360 hybrid contribution 0.360 -0.705 -0.442 0.907 sum -7.221 2.700 5.743 9.613 Atomic orbital electron populations 1.21336 0.93087 1.01553 1.01754 1.22422 0.95089 0.94655 1.05639 0.87926 1.23185 1.02358 1.00999 0.94715 1.22204 0.97972 1.01120 0.93494 0.86482 1.20640 0.95747 0.96042 0.98811 1.23140 0.81567 0.89300 0.81302 1.90527 1.57253 1.32936 1.64672 1.83882 1.35627 1.40371 1.52649 1.21164 1.07611 0.91184 1.25911 0.88835 1.25320 0.95069 0.98734 0.97131 1.69983 1.13818 1.27562 1.39183 0.85751 0.78010 0.80114 0.79324 1.19530 1.20411 1.19530 0.92660 0.92493 0.92236 0.89025 0.88936 0.88777 0.89135 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.19 37.15 0.38 -0.94 15 2 C -0.16 -2.05 6.13 -90.62 -0.56 -2.61 15 3 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 4 C -0.18 -2.43 9.82 -26.73 -0.26 -2.69 15 5 C -0.13 -2.13 5.14 -90.62 -0.47 -2.60 15 6 H 0.12 2.15 7.30 -51.93 -0.38 1.77 15 7 C -0.07 -1.39 6.09 -27.88 -0.17 -1.56 15 8 C 0.40 10.18 7.91 36.01 0.28 10.46 15 9 O -0.56 -15.35 14.80 -19.05 -0.28 -15.63 15 10 O -0.22 -6.44 9.75 -20.71 -0.20 -6.64 15 11 C -0.38 -11.64 9.65 30.92 0.30 -11.34 15 12 H 0.09 2.86 6.86 -52.49 -0.36 2.50 15 13 C 0.04 1.18 5.49 -17.53 -0.10 1.09 15 14 N -0.87 -25.98 13.67 55.48 0.76 -25.22 15 15 Si 0.94 21.76 29.55 -169.99 -5.02 16.74 15 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 19 H 0.05 0.59 7.90 -51.93 -0.41 0.18 15 20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 15 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.09 1.19 8.05 -51.93 -0.42 0.77 15 23 H 0.09 1.21 8.03 -51.93 -0.42 0.80 15 24 H 0.09 1.60 8.14 -51.93 -0.42 1.18 15 25 H 0.09 1.55 7.88 -51.93 -0.41 1.14 15 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 236.38 15.07 3.56 3.56 Total: -1.00 -33.03 236.38 -4.99 -38.03 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.22 Total: -0.65 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.59 Total: -10.19 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.76 Total: -25.22 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.48 Total: -22.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -33.03 -4.99 -38.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639373.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.306 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds