Wall clock time and date at job start Mon Mar 30 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 5 5 C 1.53000 * 60.00347 * 107.48485 * 4 2 1 6 6 H 1.08990 * 117.49990 * 252.50929 * 5 4 2 7 7 C 1.52998 * 117.49463 * 107.48750 * 5 4 2 8 8 C 1.50701 * 109.46975 * 116.37972 * 7 5 4 9 9 O 1.21209 * 119.99983 * 0.02562 * 8 7 5 10 10 O 1.34308 * 120.00250 * 179.97438 * 8 7 5 11 11 C 1.34924 * 117.00149 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99705 * 0.02562 * 11 10 8 13 13 C 1.38753 * 119.99813 * 180.02562 * 11 10 8 14 14 N 1.31440 * 120.00470 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99920 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46740 * 60.00126 * 15 13 11 17 17 H 1.48493 * 109.47152 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47224 * 300.00358 * 15 13 11 19 19 H 1.09000 * 109.47531 * 205.66829 * 1 2 3 20 20 H 1.09004 * 109.47098 * 325.66994 * 1 2 3 21 21 H 1.08998 * 109.47654 * 85.66462 * 1 2 3 22 22 H 1.09002 * 117.49910 * 359.97438 * 4 2 1 23 23 H 1.09002 * 117.49884 * 214.98139 * 4 2 1 24 24 H 1.09000 * 109.47131 * 236.37968 * 7 5 4 25 25 H 1.09001 * 109.47579 * 356.38538 * 7 5 4 26 26 H 0.97000 * 120.00429 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 0.7645 5 6 2.2363 -1.1207 -0.7655 6 1 1.6111 -1.8580 -1.2690 7 6 3.5489 -0.7754 -1.4718 8 6 4.0216 -1.9669 -2.2642 9 8 3.3727 -2.9907 -2.2643 10 8 5.1613 -1.8942 -2.9710 11 6 5.5272 -2.9961 -3.6583 12 1 4.9119 -3.8829 -3.6241 13 6 6.6940 -2.9897 -4.4092 14 7 7.4432 -1.9104 -4.4504 15 14 7.2003 -4.5149 -5.3614 16 1 6.1423 -4.8579 -6.3454 17 1 8.4745 -4.2515 -6.0769 18 1 7.3860 -5.6477 -4.4193 19 1 -0.3634 -0.9262 0.4451 20 1 -0.3633 0.8487 0.5796 21 1 -0.3634 0.0777 -1.0247 22 1 1.6112 -1.8588 1.2678 23 1 3.1715 -0.8756 1.2679 24 1 3.3889 0.0677 -2.1440 25 1 4.3021 -0.5106 -0.7298 26 1 8.2591 -1.9061 -4.9750 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307639373.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:01 Heat of formation + Delta-G solvation = -91.993168 kcal Electronic energy + Delta-G solvation = -10802.399377 eV Core-core repulsion = 8653.046721 eV Total energy + Delta-G solvation = -2149.352656 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.06751 -38.87259 -37.09670 -34.31395 -31.61817 -28.72392 -27.20745 -23.14466 -21.62025 -20.90608 -19.87998 -18.43195 -16.94995 -16.66316 -16.31583 -15.68820 -15.07755 -14.30336 -13.96047 -13.81306 -13.55530 -13.10604 -12.95208 -12.39906 -12.34226 -12.18740 -12.16715 -11.98564 -11.08209 -10.89095 -10.70958 -10.61461 -8.54740 -6.35267 1.31997 1.33040 1.49346 1.65764 2.11180 2.66187 2.94353 2.99000 3.74794 3.94720 4.03279 4.29947 4.47570 4.56913 4.70874 4.89635 4.91867 4.98180 5.02037 5.19651 5.21740 5.31342 5.49504 5.82865 6.67408 6.90217 7.77231 8.66023 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.103137 B = 0.008008 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.418078 B = 3495.458539 C = 3622.075603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 H 0.121 0.879 4 C -0.172 4.172 5 C -0.163 4.163 6 H 0.090 0.910 7 C -0.062 4.062 8 C 0.395 3.605 9 O -0.584 6.584 10 O -0.248 6.248 11 C -0.425 4.425 12 H 0.080 0.920 13 C -0.005 4.005 14 N -0.904 5.904 15 Si 1.018 2.982 16 H -0.262 1.262 17 H -0.258 1.258 18 H -0.262 1.262 19 H 0.054 0.946 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.833 4.019 6.745 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 H 0.139 0.861 4 C -0.209 4.209 5 C -0.182 4.182 6 H 0.108 0.892 7 C -0.100 4.100 8 C 0.244 3.756 9 O -0.482 6.482 10 O -0.157 6.157 11 C -0.501 4.501 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.541 5.541 15 Si 0.836 3.164 16 H -0.186 1.186 17 H -0.182 1.182 18 H -0.186 1.186 19 H 0.073 0.927 20 H 0.099 0.901 21 H 0.077 0.923 22 H 0.117 0.883 23 H 0.120 0.880 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.794 3.853 6.649 10.945 hybrid contribution 0.345 -0.794 -0.516 1.008 sum -7.449 3.059 6.133 10.122 Atomic orbital electron populations 1.21404 0.91644 1.02685 1.02230 1.22579 0.96149 0.94357 1.01775 0.86076 1.23322 1.03225 1.01741 0.92617 1.22047 0.97350 1.03725 0.95031 0.89177 1.20773 0.97187 0.93308 0.98703 1.24546 0.79992 0.90909 0.80202 1.90491 1.57626 1.34751 1.65333 1.83906 1.37554 1.40436 1.53791 1.21383 1.08985 0.91520 1.28208 0.90275 1.26553 0.94103 1.02561 0.97251 1.70064 1.14407 1.29821 1.39835 0.84688 0.78404 0.75435 0.77826 1.18638 1.18181 1.18633 0.92655 0.90083 0.92318 0.88323 0.87964 0.86956 0.87147 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 10.19 71.98 0.73 -1.61 15 2 C -0.13 -2.99 6.13 -10.79 -0.07 -3.06 15 3 H 0.12 2.37 8.14 -2.39 -0.02 2.35 15 4 C -0.17 -4.41 9.82 30.59 0.30 -4.11 15 5 C -0.16 -5.23 5.14 -10.79 -0.06 -5.28 15 6 H 0.09 3.38 7.30 -2.39 -0.02 3.36 15 7 C -0.06 -2.29 6.09 29.85 0.18 -2.11 15 8 C 0.40 20.60 7.91 71.24 0.56 21.16 15 9 O -0.58 -33.32 14.80 20.78 0.31 -33.01 15 10 O -0.25 -15.12 9.75 14.86 0.14 -14.97 15 11 C -0.43 -26.65 9.65 67.94 0.66 -25.99 15 12 H 0.08 5.03 6.86 -2.91 -0.02 5.01 15 13 C 0.00 -0.27 5.49 84.87 0.47 0.20 15 14 N -0.90 -54.43 13.67 21.62 0.30 -54.13 15 15 Si 1.02 44.31 29.55 68.60 2.03 46.34 15 16 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 17 H -0.26 -10.27 7.11 99.48 0.71 -9.57 15 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 19 H 0.05 1.06 7.90 -2.39 -0.02 1.04 15 20 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.10 2.37 8.05 -2.39 -0.02 2.35 15 23 H 0.10 2.42 8.03 -2.39 -0.02 2.40 15 24 H 0.11 3.68 8.14 -2.39 -0.02 3.67 15 25 H 0.11 3.61 7.88 -2.39 -0.02 3.59 15 26 H 0.28 15.21 8.31 -92.71 -0.77 14.44 15 Total: -1.00 -72.89 236.38 6.71 -66.17 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.16 Total: 10.42 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 2.78 Total: -20.81 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.30 Total: -54.13 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: 0.45 Total: -47.98 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.89 6.71 -66.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639373.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.818 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds