Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55766 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31684 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.08999 * 117.49959 * 252.49451 * 5 4 2 7 7 C 1.53003 * 117.49792 * 107.48056 * 5 4 2 8 8 C 1.50691 * 109.47598 * 116.38956 * 7 5 4 9 9 O 1.21211 * 119.99660 * 359.97438 * 8 7 5 10 10 O 1.34313 * 120.00558 * 179.97438 * 8 7 5 11 11 C 1.34916 * 117.00286 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99954 * 0.02562 * 11 10 8 13 13 C 1.38748 * 120.00050 * 180.02562 * 11 10 8 14 14 N 1.31445 * 120.00212 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00118 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47310 * 59.99634 * 15 13 11 17 17 H 1.48502 * 109.47347 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46948 * 299.99926 * 15 13 11 19 19 H 1.09005 * 109.47034 * 154.29268 * 1 2 3 20 20 H 1.08996 * 109.47323 * 274.29157 * 1 2 3 21 21 H 1.08997 * 109.47719 * 34.29727 * 1 2 3 22 22 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 23 23 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 24 24 H 1.08998 * 109.47090 * 236.39620 * 7 5 4 25 25 H 1.09001 * 109.47114 * 356.38887 * 7 5 4 26 26 H 0.96993 * 120.00122 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 3.1720 -0.8767 1.2681 7 6 1.3590 -2.1573 1.4709 8 6 2.2300 -3.0985 2.2622 9 8 3.4336 -2.9556 2.2613 10 8 1.6726 -4.0957 2.9686 11 6 2.5089 -4.9024 3.6543 12 1 3.5746 -4.7307 3.6191 13 6 1.9998 -5.9527 4.4045 14 7 0.7028 -6.1621 4.4469 15 14 3.1576 -7.0693 5.3544 16 1 3.9251 -6.2645 6.3384 17 1 2.3702 -8.1054 6.0697 18 1 4.0979 -7.7253 4.4106 19 1 -0.3633 -0.9260 -0.4458 20 1 -0.3634 0.0769 1.0247 21 1 -0.3634 0.8489 -0.5790 22 1 3.1715 -0.8751 -1.2684 23 1 1.6112 -1.8581 -1.2688 24 1 0.6678 -1.6495 2.1435 25 1 0.7947 -2.7219 0.7286 26 1 0.3469 -6.8960 4.9716 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307639374.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = -91.216608 kcal Electronic energy + Delta-G solvation = -10888.805842 eV Core-core repulsion = 8739.486860 eV Total energy + Delta-G solvation = -2149.318982 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.08402 -38.95984 -37.09735 -34.31127 -31.14999 -29.08942 -27.31302 -23.14078 -22.01343 -20.07862 -19.86623 -18.62010 -17.12363 -16.75104 -16.26119 -15.80209 -14.77281 -14.43045 -14.10118 -13.75620 -13.51854 -13.11893 -12.86001 -12.46303 -12.33289 -12.20589 -12.14528 -11.94366 -11.05730 -10.82563 -10.70896 -10.65741 -8.54596 -6.35088 1.31996 1.33256 1.49513 1.65589 2.11408 2.67005 2.94854 2.99370 3.73985 3.93474 4.00151 4.31016 4.47380 4.57826 4.69720 4.88824 4.95203 5.00906 5.04737 5.19017 5.24426 5.31577 5.49905 5.82998 6.67260 6.90381 7.77220 8.66193 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.090295 B = 0.008603 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.019814 B = 3253.972312 C = 3470.163263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 H 0.119 0.881 4 C -0.173 4.173 5 C -0.165 4.165 6 H 0.091 0.909 7 C -0.059 4.059 8 C 0.395 3.605 9 O -0.584 6.584 10 O -0.248 6.248 11 C -0.425 4.425 12 H 0.079 0.921 13 C -0.004 4.004 14 N -0.904 5.904 15 Si 1.018 2.982 16 H -0.262 1.262 17 H -0.258 1.258 18 H -0.262 1.262 19 H 0.058 0.942 20 H 0.061 0.939 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 8.116 -6.717 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 H 0.137 0.863 4 C -0.210 4.210 5 C -0.183 4.183 6 H 0.109 0.891 7 C -0.096 4.096 8 C 0.243 3.757 9 O -0.482 6.482 10 O -0.157 6.157 11 C -0.501 4.501 12 H 0.097 0.903 13 C -0.204 4.204 14 N -0.541 5.541 15 Si 0.837 3.163 16 H -0.186 1.186 17 H -0.182 1.182 18 H -0.186 1.186 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.098 0.902 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.195 8.002 -6.623 10.456 hybrid contribution 0.655 -0.589 0.508 1.017 sum -0.540 7.413 -6.115 9.625 Atomic orbital electron populations 1.21442 0.91585 1.02905 1.02488 1.22554 0.96305 0.94031 1.01716 0.86321 1.23289 1.03095 1.02021 0.92565 1.22038 1.00901 1.00271 0.95092 0.89085 1.20706 0.96595 0.93748 0.98585 1.24555 0.88619 0.82324 0.80204 1.90491 1.18366 1.74031 1.65308 1.83905 1.40759 1.37141 1.53848 1.21381 0.90367 1.10035 1.28302 0.90283 1.26549 0.98770 0.97885 0.97227 1.70065 1.13253 1.30995 1.39807 0.84687 0.76925 0.76902 0.77832 1.18641 1.18185 1.18641 0.92303 0.91964 0.90198 0.88171 0.88107 0.87106 0.87388 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.20 71.98 0.66 -1.79 15 2 C -0.13 -2.94 6.41 -10.77 -0.07 -3.00 15 3 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 4 C -0.17 -4.43 9.82 30.60 0.30 -4.13 15 5 C -0.16 -5.29 5.42 -10.77 -0.06 -5.34 15 6 H 0.09 3.39 7.31 -2.39 -0.02 3.37 15 7 C -0.06 -2.18 5.17 29.85 0.15 -2.03 15 8 C 0.39 20.60 7.91 71.23 0.56 21.16 15 9 O -0.58 -33.32 14.80 20.77 0.31 -33.02 15 10 O -0.25 -15.10 9.75 14.89 0.15 -14.96 15 11 C -0.43 -26.63 9.64 67.94 0.66 -25.97 15 12 H 0.08 5.02 6.86 -2.91 -0.02 5.00 15 13 C 0.00 -0.25 5.49 84.87 0.47 0.22 15 14 N -0.90 -54.37 13.67 21.62 0.30 -54.08 15 15 Si 1.02 44.27 29.55 68.60 2.03 46.30 15 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 15 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 19 H 0.06 1.14 7.90 -2.38 -0.02 1.12 15 20 H 0.06 1.22 7.83 -2.39 -0.02 1.21 15 21 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 22 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.10 2.43 7.94 -2.39 -0.02 2.41 15 24 H 0.11 3.69 7.77 -2.39 -0.02 3.67 15 25 H 0.11 3.59 7.88 -2.39 -0.02 3.57 15 26 H 0.28 15.20 8.31 -92.71 -0.77 14.43 15 Total: -1.00 -72.70 234.36 6.61 -66.09 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.16 Total: 10.55 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 2.67 Total: -20.89 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.30 Total: -54.08 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: 0.45 Total: -47.97 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.70 6.61 -66.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639374.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.123 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds