Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.08999 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.49968 * 215.00840 * 5 2 1 8 8 C 1.50701 * 109.47250 * 174.99987 * 7 5 2 9 9 O 1.21208 * 119.99883 * 359.97438 * 8 7 5 10 10 O 1.34308 * 119.99962 * 179.97438 * 8 7 5 11 11 C 1.34921 * 116.99958 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00010 * 0.02562 * 11 10 8 13 13 C 1.38747 * 120.00030 * 179.97438 * 11 10 8 14 14 N 1.31442 * 120.00108 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00078 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47091 * 90.00038 * 15 13 11 17 17 H 1.48505 * 109.47042 * 210.00046 * 15 13 11 18 18 H 1.48499 * 109.47010 * 329.99832 * 15 13 11 19 19 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 20 20 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 21 21 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 22 22 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 23 23 H 1.08999 * 117.49942 * 144.97366 * 4 2 1 24 24 H 1.09002 * 109.46825 * 294.99320 * 7 5 2 25 25 H 1.08997 * 109.47412 * 54.99052 * 7 5 2 26 26 H 0.97004 * 120.00663 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2685 7 6 3.5486 -0.7753 1.4723 8 6 4.0213 -1.9670 2.2645 9 8 3.3727 -2.9909 2.2641 10 8 5.1613 -1.8944 2.9709 11 6 5.5272 -2.9963 3.6581 12 1 4.9121 -3.8834 3.6234 13 6 6.6943 -2.9902 4.4085 14 7 7.0505 -4.0635 5.0784 15 14 7.7585 -1.4562 4.4679 16 1 7.3227 -0.5948 5.5963 17 1 9.1782 -1.8459 4.6622 18 1 7.6206 -0.7084 3.1923 19 1 -0.3634 -0.9269 -0.4438 20 1 -0.3633 0.0792 1.0246 21 1 -0.3634 0.8478 -0.5809 22 1 1.6112 -1.8584 -1.2685 23 1 3.1711 -0.8746 -1.2692 24 1 4.3020 -0.5102 0.7305 25 1 3.3883 0.0676 2.1445 26 1 7.8666 -4.0595 5.6028 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307639375.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = -68.522027 kcal Electronic energy + Delta-G solvation = -10835.416192 eV Core-core repulsion = 8687.081320 eV Total energy + Delta-G solvation = -2148.334871 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.27075 -37.66196 -35.20113 -32.26341 -30.34869 -27.62731 -25.17329 -21.55537 -20.36736 -19.40689 -17.92205 -16.57983 -15.39310 -14.94157 -14.68227 -13.95664 -13.52183 -13.11984 -12.54849 -12.41528 -12.10735 -11.93565 -11.34387 -11.13323 -11.09249 -10.44206 -10.33060 -9.85709 -9.66060 -9.61059 -9.07833 -8.64098 -6.32711 -4.08336 3.17969 3.26187 3.38639 3.46601 3.82563 4.20838 4.28956 4.87297 4.98219 5.09170 5.15672 5.33704 5.57255 5.72347 5.79128 5.91830 5.92780 5.97566 6.04466 6.31551 6.53671 6.57795 7.79857 8.08423 8.68274 9.06296 9.74864 10.76130 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.080928 B = 0.008856 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.903136 B = 3161.095188 C = 3362.084340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.158 4.158 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.132 4.132 6 H 0.119 0.881 7 C -0.076 4.076 8 C 0.412 3.588 9 O -0.539 6.539 10 O -0.256 6.256 11 C -0.381 4.381 12 H 0.108 0.892 13 C 0.064 3.936 14 N -0.878 5.878 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.261 1.261 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 9.805 -8.463 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.176 4.176 3 H 0.121 0.879 4 C -0.212 4.212 5 C -0.150 4.150 6 H 0.137 0.863 7 C -0.114 4.114 8 C 0.258 3.742 9 O -0.434 6.434 10 O -0.165 6.165 11 C -0.457 4.457 12 H 0.126 0.874 13 C -0.139 4.139 14 N -0.517 5.517 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.185 1.185 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.010 9.440 -8.317 14.402 hybrid contribution 0.630 0.460 0.158 0.796 sum -6.380 9.900 -8.159 14.328 Atomic orbital electron populations 1.21344 0.93007 1.01642 1.01812 1.22422 0.95172 0.94582 1.05472 0.87936 1.23206 1.02399 1.01025 0.94554 1.22216 0.97851 1.01344 0.93620 0.86323 1.20682 0.96051 0.95819 0.98815 1.22936 0.80888 0.89469 0.80954 1.90576 1.56535 1.32717 1.63561 1.83524 1.37414 1.41314 1.54210 1.20649 1.08761 0.91036 1.25266 0.87416 1.24547 0.96360 0.98058 0.94928 1.69612 1.24718 1.27946 1.29469 0.86207 0.78815 0.82274 0.79561 1.19903 1.20825 1.18464 0.92586 0.92189 0.92454 0.88905 0.88912 0.88997 0.88631 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.19 37.16 0.38 -0.87 15 2 C -0.16 -1.89 6.12 -90.62 -0.56 -2.45 15 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 4 C -0.17 -2.27 9.83 -26.70 -0.26 -2.54 15 5 C -0.13 -2.04 5.14 -90.58 -0.47 -2.51 15 6 H 0.12 2.08 7.31 -51.93 -0.38 1.70 15 7 C -0.08 -1.30 6.09 -27.88 -0.17 -1.47 15 8 C 0.41 9.90 7.91 36.01 0.28 10.18 15 9 O -0.54 -14.61 14.80 -19.05 -0.28 -14.89 15 10 O -0.26 -6.92 8.58 -20.70 -0.18 -7.10 15 11 C -0.38 -11.63 10.10 30.92 0.31 -11.32 15 12 H 0.11 3.62 7.09 -52.48 -0.37 3.25 15 13 C 0.06 1.88 5.49 -17.53 -0.10 1.78 15 14 N -0.88 -26.51 13.96 55.48 0.77 -25.73 15 15 Si 0.91 21.76 28.62 -169.99 -4.86 16.90 15 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 18 H -0.26 -6.12 7.11 56.52 0.40 -5.72 15 19 H 0.06 0.57 7.90 -51.93 -0.41 0.16 15 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 15 22 H 0.09 1.14 8.05 -51.92 -0.42 0.72 15 23 H 0.09 1.13 8.04 -51.93 -0.42 0.71 15 24 H 0.09 1.39 7.88 -51.93 -0.41 0.99 15 25 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.28 7.67 8.31 -40.82 -0.34 7.33 15 LS Contribution 235.27 15.07 3.55 3.55 Total: -1.00 -32.68 235.27 -4.81 -37.49 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -3.23 Total: -1.03 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.57 Total: -9.18 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.77 Total: -25.73 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.46 Total: -21.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.90 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.68 -4.81 -37.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639375.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.029 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds