Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.08999 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.49968 * 215.00840 * 5 2 1 8 8 C 1.50701 * 109.47250 * 174.99987 * 7 5 2 9 9 O 1.21208 * 119.99883 * 359.97438 * 8 7 5 10 10 O 1.34308 * 119.99962 * 179.97438 * 8 7 5 11 11 C 1.34921 * 116.99958 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00010 * 0.02562 * 11 10 8 13 13 C 1.38747 * 120.00030 * 179.97438 * 11 10 8 14 14 N 1.31442 * 120.00108 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00078 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47091 * 90.00038 * 15 13 11 17 17 H 1.48505 * 109.47042 * 210.00046 * 15 13 11 18 18 H 1.48499 * 109.47010 * 329.99832 * 15 13 11 19 19 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 20 20 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 21 21 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 22 22 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 23 23 H 1.08999 * 117.49942 * 144.97366 * 4 2 1 24 24 H 1.09002 * 109.46825 * 294.99320 * 7 5 2 25 25 H 1.08997 * 109.47412 * 54.99052 * 7 5 2 26 26 H 0.97004 * 120.00663 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2685 7 6 3.5486 -0.7753 1.4723 8 6 4.0213 -1.9670 2.2645 9 8 3.3727 -2.9909 2.2641 10 8 5.1613 -1.8944 2.9709 11 6 5.5272 -2.9963 3.6581 12 1 4.9121 -3.8834 3.6234 13 6 6.6943 -2.9902 4.4085 14 7 7.0505 -4.0635 5.0784 15 14 7.7585 -1.4562 4.4679 16 1 7.3227 -0.5948 5.5963 17 1 9.1782 -1.8459 4.6622 18 1 7.6206 -0.7084 3.1923 19 1 -0.3634 -0.9269 -0.4438 20 1 -0.3633 0.0792 1.0246 21 1 -0.3634 0.8478 -0.5809 22 1 1.6112 -1.8584 -1.2685 23 1 3.1711 -0.8746 -1.2692 24 1 4.3020 -0.5102 0.7305 25 1 3.3883 0.0676 2.1445 26 1 7.8666 -4.0595 5.6028 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307639375.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = -89.487027 kcal Electronic energy + Delta-G solvation = -10836.325302 eV Core-core repulsion = 8687.081320 eV Total energy + Delta-G solvation = -2149.243982 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.20906 -38.89953 -37.23383 -34.51124 -31.68027 -28.80073 -27.22090 -22.99174 -21.55761 -20.89243 -20.14790 -18.53288 -17.07715 -16.84164 -16.19905 -15.45444 -15.11359 -14.49428 -14.12408 -13.88658 -13.76521 -13.14197 -12.97580 -12.45661 -12.34245 -12.22427 -12.16324 -11.86086 -11.15407 -10.88764 -10.83811 -10.61960 -8.55346 -6.42965 1.30813 1.34078 1.54096 1.59497 2.27084 2.39530 2.88831 2.92855 3.72508 3.93770 4.00652 4.21803 4.47983 4.54976 4.69196 4.78718 4.92499 4.98313 5.00989 5.22335 5.30944 5.47883 5.51581 5.89677 6.54781 6.82266 7.59777 8.58031 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.080928 B = 0.008856 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.903136 B = 3161.095188 C = 3362.084340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.127 4.127 3 H 0.127 0.873 4 C -0.174 4.174 5 C -0.168 4.168 6 H 0.086 0.914 7 C -0.062 4.062 8 C 0.408 3.592 9 O -0.579 6.579 10 O -0.260 6.260 11 C -0.412 4.412 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.248 1.248 19 H 0.051 0.949 20 H 0.058 0.942 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 12.999 -9.582 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 H 0.145 0.855 4 C -0.211 4.211 5 C -0.186 4.186 6 H 0.104 0.896 7 C -0.099 4.099 8 C 0.256 3.744 9 O -0.475 6.475 10 O -0.170 6.170 11 C -0.488 4.488 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.808 3.192 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.172 1.172 19 H 0.070 0.930 20 H 0.077 0.923 21 H 0.099 0.901 22 H 0.112 0.888 23 H 0.124 0.876 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.527 12.619 -9.445 17.060 hybrid contribution 0.331 -0.637 0.464 0.854 sum -6.196 11.982 -8.981 16.205 Atomic orbital electron populations 1.21419 0.91984 1.02567 1.02216 1.22576 0.95935 0.94472 1.01520 0.85547 1.23346 1.03375 1.01758 0.92617 1.22089 0.97624 1.03803 0.95088 0.89564 1.20872 0.97213 0.92870 0.98913 1.24599 0.79200 0.91061 0.79581 1.90561 1.57273 1.35101 1.64522 1.83538 1.38981 1.39593 1.54878 1.20319 1.09565 0.90917 1.28017 0.92958 1.25656 0.97289 1.02306 0.93419 1.69716 1.25758 1.30589 1.29959 0.85003 0.76780 0.76974 0.80449 1.18300 1.19021 1.17152 0.92955 0.92314 0.90061 0.88774 0.87561 0.86087 0.85776 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 10.19 71.98 0.73 -1.49 15 2 C -0.13 -2.61 6.12 -10.79 -0.07 -2.67 15 3 H 0.13 2.05 8.14 -2.39 -0.02 2.04 15 4 C -0.17 -4.10 9.83 30.62 0.30 -3.80 15 5 C -0.17 -4.95 5.14 -10.77 -0.06 -5.01 15 6 H 0.09 3.11 7.31 -2.39 -0.02 3.09 15 7 C -0.06 -1.97 6.09 29.85 0.18 -1.79 15 8 C 0.41 19.84 7.91 71.24 0.56 20.40 15 9 O -0.58 -32.89 14.80 20.78 0.31 -32.58 15 10 O -0.26 -14.21 8.58 14.88 0.13 -14.08 15 11 C -0.41 -26.15 10.10 67.94 0.69 -25.47 15 12 H 0.05 3.79 7.09 -2.91 -0.02 3.77 15 13 C 0.01 0.75 5.49 84.87 0.47 1.22 15 14 N -0.92 -56.81 13.96 21.62 0.30 -56.51 15 15 Si 0.99 44.02 28.62 68.60 1.96 45.98 15 16 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 18 H -0.25 -10.48 7.11 99.48 0.71 -9.77 15 19 H 0.05 0.97 7.90 -2.39 -0.02 0.95 15 20 H 0.06 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.08 1.09 8.14 -2.38 -0.02 1.07 15 22 H 0.09 2.17 8.05 -2.38 -0.02 2.15 15 23 H 0.11 2.22 8.04 -2.39 -0.02 2.20 15 24 H 0.12 3.22 7.88 -2.39 -0.02 3.20 15 25 H 0.12 3.28 8.14 -2.39 -0.02 3.26 15 26 H 0.29 16.03 8.31 -92.71 -0.77 15.26 15 Total: -1.00 -74.63 235.27 6.67 -67.96 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.16 Total: 7.84 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 2.81 Total: -18.60 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.51 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: 0.44 Total: -46.67 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.96 Total: 45.98 kcal Total: -74.63 6.67 -67.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639375.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.527 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds