Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.31001 * 119.99920 * 125.00462 * 10 9 7 12 12 C 1.50695 * 119.99784 * 180.02562 * 11 10 9 13 13 H 1.08997 * 115.71809 * 335.55203 * 12 11 10 14 14 O 1.42902 * 117.77130 * 188.60357 * 12 11 10 15 15 C 1.42894 * 64.73823 * 253.16094 * 14 12 11 16 16 H 1.09001 * 117.77543 * 253.16320 * 15 14 12 17 17 C 1.53000 * 117.77297 * 106.84120 * 15 14 12 18 18 O 1.42899 * 109.47214 * 118.98748 * 17 15 14 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08006 * 119.99937 * 305.00529 * 10 9 7 23 23 H 1.08000 * 119.99870 * 359.97438 * 11 10 9 24 24 H 1.09001 * 109.46870 * 238.98451 * 17 15 14 25 25 H 1.08997 * 109.47281 * 358.98245 * 17 15 14 26 26 H 0.96699 * 113.99872 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.1616 -4.5611 0.9438 12 6 3.1413 -5.7061 0.9491 13 1 3.5857 -5.9529 -0.0151 14 8 2.9113 -6.7749 1.8694 15 6 3.9966 -5.9068 2.2018 16 1 5.0097 -6.2866 2.0696 17 6 3.7990 -4.9313 3.3638 18 8 4.7593 -5.2067 4.3856 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 2.9892 -3.7096 -0.7556 23 1 1.4032 -4.4956 1.7099 24 1 3.9311 -3.9098 3.0070 25 1 2.7938 -5.0475 3.7689 26 1 4.6924 -4.6251 5.1552 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307653313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -54.985067 kcal Electronic energy + Delta-G solvation = -10588.630221 eV Core-core repulsion = 8440.882357 eV Total energy + Delta-G solvation = -2147.747865 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.29660 -36.47717 -34.61589 -32.32652 -28.82503 -27.83940 -24.62786 -22.73122 -20.80375 -18.85608 -17.52746 -16.43540 -15.88916 -15.35329 -15.06224 -14.48644 -13.81869 -13.15745 -12.42791 -12.35431 -12.05757 -11.43520 -11.07679 -10.84443 -10.59429 -10.53068 -10.27817 -9.92146 -9.55579 -9.47761 -8.52004 -8.05418 -6.09351 -4.13765 2.68864 3.28094 3.33045 3.35276 3.84419 4.12757 4.38698 4.67363 4.97381 5.15567 5.26112 5.27708 5.53082 5.58854 5.79048 6.01117 6.08094 6.69928 7.15208 7.28467 7.51818 7.59687 7.77428 7.88431 8.27460 8.91603 9.50692 11.01172 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.047995 B = 0.008438 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.258341 B = 3317.686679 C = 3681.223365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.034 3.966 10 C -0.066 4.066 11 C -0.223 4.223 12 C 0.051 3.949 13 H 0.125 0.875 14 O -0.356 6.356 15 C -0.013 4.013 16 H 0.126 0.874 17 C 0.091 3.909 18 O -0.576 6.576 19 H 0.263 0.737 20 H 0.026 0.974 21 H 0.035 0.965 22 H 0.098 0.902 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.833 -6.310 3.915 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.084 4.084 11 C -0.241 4.241 12 C -0.005 4.005 13 H 0.142 0.858 14 O -0.277 6.277 15 C -0.070 4.070 16 H 0.143 0.857 17 C 0.013 3.987 18 O -0.382 6.382 19 H 0.073 0.927 20 H 0.044 0.956 21 H 0.053 0.947 22 H 0.116 0.884 23 H 0.129 0.871 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.647 -6.944 3.580 10.258 hybrid contribution 0.156 1.210 0.428 1.293 sum 6.802 -5.734 4.008 9.758 Atomic orbital electron populations 1.69944 1.06101 1.27021 1.50193 1.25023 0.94885 0.99358 0.95072 0.86590 0.79531 0.82787 0.78712 1.20110 1.21215 1.20172 1.21036 0.93071 0.90238 1.51503 0.92431 1.18457 0.93216 0.90311 0.98252 1.23411 0.96835 0.93848 0.94285 1.22110 1.02051 0.96370 1.03619 1.22652 0.97745 0.89523 0.90629 0.85792 1.91643 1.49987 1.40749 1.45291 1.23479 0.91109 0.96079 0.96374 0.85653 1.21965 0.91872 0.97526 0.87292 1.86380 1.58047 1.62253 1.31563 0.92720 0.95579 0.94683 0.88437 0.87059 0.90737 0.92463 0.76964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.52 -14.17 9.09 -34.44 -0.31 -14.48 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.85 5.42 -29.03 -0.16 0.70 15 10 C -0.07 -1.32 9.09 -36.02 -0.33 -1.65 15 11 C -0.22 -4.08 8.52 -36.03 -0.31 -4.39 15 12 C 0.05 0.82 6.85 -27.88 -0.19 0.63 15 13 H 0.12 1.68 8.14 -51.93 -0.42 1.25 15 14 O -0.36 -6.35 14.42 -35.23 -0.51 -6.86 15 15 C -0.01 -0.20 6.93 -26.73 -0.19 -0.39 15 16 H 0.13 1.68 8.14 -51.93 -0.42 1.25 15 17 C 0.09 1.30 6.56 37.16 0.24 1.54 15 18 O -0.58 -7.53 13.66 -35.23 -0.48 -8.01 15 19 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 20 H 0.03 0.69 7.79 -51.93 -0.40 0.28 15 21 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.10 1.78 8.05 -52.48 -0.42 1.36 15 23 H 0.11 2.13 7.84 -52.49 -0.41 1.72 15 24 H 0.07 1.06 8.04 -51.93 -0.42 0.64 15 25 H 0.06 0.83 8.13 -51.93 -0.42 0.41 15 26 H 0.38 3.15 9.12 45.56 0.42 3.57 15 LS Contribution 239.59 15.07 3.61 3.61 Total: -1.00 -30.83 239.59 -5.47 -36.30 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -2.47 Total: 0.90 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.33 Total: -16.52 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.99 Total: -14.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.83 -5.47 -36.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307653313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.685 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds