Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.31001 * 119.99920 * 125.00462 * 10 9 7 12 12 C 1.50695 * 119.99784 * 180.02562 * 11 10 9 13 13 H 1.08997 * 115.71809 * 335.55203 * 12 11 10 14 14 O 1.42902 * 117.77130 * 188.60357 * 12 11 10 15 15 C 1.42894 * 64.73823 * 253.16094 * 14 12 11 16 16 H 1.09001 * 117.77543 * 253.16320 * 15 14 12 17 17 C 1.53000 * 117.77297 * 106.84120 * 15 14 12 18 18 O 1.42899 * 109.47214 * 118.98748 * 17 15 14 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08006 * 119.99937 * 305.00529 * 10 9 7 23 23 H 1.08000 * 119.99870 * 359.97438 * 11 10 9 24 24 H 1.09001 * 109.46870 * 238.98451 * 17 15 14 25 25 H 1.08997 * 109.47281 * 358.98245 * 17 15 14 26 26 H 0.96699 * 113.99872 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.1616 -4.5611 0.9438 12 6 3.1413 -5.7061 0.9491 13 1 3.5857 -5.9529 -0.0151 14 8 2.9113 -6.7749 1.8694 15 6 3.9966 -5.9068 2.2018 16 1 5.0097 -6.2866 2.0696 17 6 3.7990 -4.9313 3.3638 18 8 4.7593 -5.2067 4.3856 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 2.9892 -3.7096 -0.7556 23 1 1.4032 -4.4956 1.7099 24 1 3.9311 -3.9098 3.0070 25 1 2.7938 -5.0475 3.7689 26 1 4.6924 -4.6251 5.1552 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307653313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -78.372595 kcal Electronic energy + Delta-G solvation = -10589.644381 eV Core-core repulsion = 8440.882357 eV Total energy + Delta-G solvation = -2148.762024 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.57587 -37.51865 -36.40666 -34.27286 -30.36819 -29.34308 -26.27659 -24.32910 -22.25346 -20.31940 -18.64663 -18.46411 -17.14226 -16.87667 -16.41858 -16.13648 -15.03744 -14.52653 -14.37139 -14.00196 -13.70929 -12.94409 -12.79360 -12.49720 -12.31557 -12.11175 -11.66988 -11.49560 -11.24861 -11.00174 -10.60366 -9.65567 -8.19647 -6.32481 1.18839 1.44265 1.46194 1.54377 2.42545 2.62485 2.95646 3.13496 3.45000 3.78228 4.01279 4.10950 4.20104 4.29602 4.61159 4.66822 4.89138 5.04366 5.31215 5.36196 5.73182 5.75662 6.02561 6.23557 6.79202 6.82811 7.37158 8.91060 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.047995 B = 0.008438 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.258341 B = 3317.686679 C = 3681.223365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.037 3.963 10 C -0.082 4.082 11 C -0.197 4.197 12 C 0.049 3.951 13 H 0.157 0.843 14 O -0.382 6.382 15 C -0.005 4.005 16 H 0.150 0.850 17 C 0.092 3.908 18 O -0.584 6.584 19 H 0.265 0.735 20 H -0.002 1.002 21 H 0.009 0.991 22 H 0.123 0.877 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.834 -6.349 4.086 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.000 4.000 10 C -0.100 4.100 11 C -0.215 4.215 12 C -0.008 4.008 13 H 0.174 0.826 14 O -0.303 6.303 15 C -0.062 4.062 16 H 0.167 0.833 17 C 0.014 3.986 18 O -0.393 6.393 19 H 0.073 0.927 20 H 0.017 0.983 21 H 0.027 0.973 22 H 0.141 0.859 23 H 0.114 0.886 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 8.662 -6.989 3.767 11.750 hybrid contribution -0.486 1.157 0.467 1.339 sum 8.176 -5.832 4.234 10.899 Atomic orbital electron populations 1.70086 1.07922 1.28017 1.51405 1.25987 0.95722 1.03424 0.94581 0.85458 0.78195 0.77818 0.79335 1.18931 1.21136 1.19067 1.21493 0.93742 0.91314 1.50923 0.91484 1.18280 0.93731 0.92220 0.95755 1.23038 0.97322 0.93144 0.96487 1.22128 1.01293 0.96400 1.01699 1.22740 0.97334 0.88328 0.92365 0.82556 1.91639 1.51177 1.41252 1.46246 1.23834 0.91582 0.95120 0.95659 0.83300 1.21881 0.91791 0.97313 0.87623 1.86333 1.57504 1.63188 1.32269 0.92673 0.98348 0.97272 0.85932 0.88604 0.90703 0.93314 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.38 15 2 C 0.00 0.05 5.46 84.65 0.46 0.51 15 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 15 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 15 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 7 C -0.54 -29.32 9.09 25.60 0.23 -29.09 15 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 15 9 C 0.04 1.89 5.42 29.10 0.16 2.05 15 10 C -0.08 -3.24 9.09 25.65 0.23 -3.00 15 11 C -0.20 -7.01 8.52 25.64 0.22 -6.79 15 12 C 0.05 1.43 6.85 29.85 0.20 1.63 15 13 H 0.16 3.63 8.14 -2.39 -0.02 3.62 15 14 O -0.38 -12.85 14.42 -148.98 -2.15 -15.00 15 15 C -0.01 -0.15 6.93 30.60 0.21 0.06 15 16 H 0.15 3.43 8.14 -2.39 -0.02 3.41 15 17 C 0.09 2.44 6.56 71.98 0.47 2.92 15 18 O -0.58 -13.81 13.66 -148.98 -2.04 -15.84 15 19 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 20 H 0.00 -0.10 7.79 -2.39 -0.02 -0.12 15 21 H 0.01 0.51 8.14 -2.38 -0.02 0.49 15 22 H 0.12 4.23 8.05 -2.91 -0.02 4.20 15 23 H 0.10 3.69 7.84 -2.91 -0.02 3.67 15 24 H 0.07 1.99 8.04 -2.39 -0.02 1.97 15 25 H 0.05 1.37 8.13 -2.39 -0.02 1.35 15 26 H 0.40 5.68 9.12 -74.06 -0.68 5.00 15 Total: -1.00 -65.63 239.59 0.81 -64.82 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.49 Total: 8.43 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.19 Total: -31.71 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.38 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -4.18 Total: -30.84 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.63 0.81 -64.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307653313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.557 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds