Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 H 1.08996 * 109.49091 * 304.97339 * 3 2 1 5 5 C 1.53088 * 109.47757 * 184.94073 * 3 2 1 6 6 C 1.53184 * 109.16149 * 182.41252 * 5 3 2 7 7 C 1.53176 * 109.03840 * 56.97836 * 6 5 3 8 8 C 1.53093 * 109.16415 * 303.02439 * 7 6 5 9 9 H 1.09005 * 109.48856 * 297.61985 * 8 7 6 10 10 C 1.50701 * 109.47985 * 177.59327 * 8 7 6 11 11 H 1.08002 * 119.99761 * 0.04926 * 10 8 7 12 12 C 1.37871 * 119.99694 * 180.33489 * 10 8 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 O 1.42900 * 109.41856 * 57.60447 * 8 7 6 19 19 H 1.09000 * 109.47111 * 300.00352 * 1 2 3 20 20 H 1.09004 * 109.46543 * 59.99696 * 1 2 3 21 21 H 1.08994 * 109.47432 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47086 * 240.00201 * 2 1 3 23 23 H 1.09002 * 109.46992 * 120.00584 * 2 1 3 24 24 H 1.08999 * 109.52661 * 302.31251 * 5 3 2 25 25 H 1.08994 * 109.52570 * 62.44603 * 5 3 2 26 26 H 1.08995 * 109.54385 * 176.85288 * 6 5 3 27 27 H 1.09003 * 109.53774 * 297.02583 * 6 5 3 28 28 H 1.08999 * 109.52354 * 183.11374 * 7 6 5 29 29 H 1.08994 * 109.51782 * 62.92935 * 7 6 5 30 30 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6061 1.9817 -0.8420 5 6 3.5659 1.4444 -0.1243 6 6 4.0736 2.8884 -0.0629 7 6 3.5959 3.5309 1.2429 8 6 2.0688 3.4483 1.3145 9 1 1.6350 4.0138 0.4897 10 6 1.5951 4.0253 2.6235 11 1 2.3109 4.4130 3.3333 12 6 0.2484 4.0529 2.9175 13 7 -0.6232 3.5808 2.0533 14 14 -0.3382 4.7611 4.5435 15 1 -0.5962 6.2150 4.3859 16 1 -1.5902 4.0784 4.9579 17 1 0.7052 4.5530 5.5794 18 8 1.6621 2.0816 1.2210 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.9989 0.8710 0.6953 25 1 3.8545 0.9960 -1.0749 26 1 5.1630 2.8935 -0.0947 27 1 3.6814 3.4490 -0.9115 28 1 3.9058 4.5755 1.2696 29 1 4.0295 2.9996 2.0901 30 1 -1.5707 3.5998 2.2603 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307656566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -92.421765 kcal Electronic energy + Delta-G solvation = -11851.803223 eV Core-core repulsion = 9838.265076 eV Total energy + Delta-G solvation = -2013.538147 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.94562 -35.41457 -34.30534 -33.75445 -30.79486 -27.65888 -25.34643 -23.56525 -21.92823 -20.89430 -18.66144 -16.95935 -16.69901 -16.05588 -15.29891 -15.05494 -14.49978 -14.36309 -14.21860 -13.59965 -12.89437 -12.80548 -12.60131 -12.40051 -12.37000 -12.02388 -11.85595 -11.67588 -11.58178 -11.07399 -10.83341 -10.49252 -9.64218 -8.12785 -6.33292 1.40312 1.42093 1.52786 2.41336 3.05032 3.66597 3.93205 4.14310 4.18972 4.32635 4.45201 4.49864 4.62609 4.72744 4.84949 4.99866 5.01302 5.07717 5.14395 5.24914 5.29399 5.34541 5.39039 5.59280 5.60411 5.79742 6.24099 6.69527 7.27609 7.43564 8.94763 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.041215 B = 0.015145 C = 0.011706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.196115 B = 1848.393987 C = 2391.382705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.069 3.931 4 H 0.022 0.978 5 C -0.139 4.139 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.216 3.784 9 H -0.026 1.026 10 C -0.555 4.555 11 H 0.062 0.938 12 C 0.025 3.975 13 N -0.894 5.894 14 Si 0.961 3.039 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.266 1.266 18 O -0.381 6.381 19 H 0.028 0.972 20 H 0.044 0.956 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 -4.654 -4.162 8.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C 0.011 3.989 4 H 0.040 0.960 5 C -0.177 4.177 6 C -0.154 4.154 7 C -0.175 4.175 8 C 0.160 3.840 9 H -0.009 1.009 10 C -0.592 4.592 11 H 0.081 0.919 12 C -0.177 4.177 13 N -0.530 5.530 14 Si 0.785 3.215 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.191 1.191 18 O -0.301 6.301 19 H 0.048 0.952 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.298 -4.779 -4.058 8.208 hybrid contribution -0.529 0.691 0.582 1.047 sum 4.769 -4.088 -3.476 7.178 Atomic orbital electron populations 1.21584 0.96217 1.01018 1.00858 1.21482 0.96029 0.94089 1.02531 1.22187 0.94005 0.94344 0.88408 0.96027 1.22148 0.95682 0.97088 1.02742 1.21606 1.01050 0.95984 0.96804 1.22110 0.97565 1.00127 0.97735 1.19514 0.89690 0.80066 0.94744 1.00882 1.21446 0.92666 1.40461 1.04660 0.91947 1.25925 0.97062 0.94464 1.00285 1.70179 1.01783 1.44497 1.36573 0.85539 0.77743 0.78532 0.79655 1.19488 1.20779 1.19089 1.88224 1.79333 1.26406 1.36168 0.95230 0.93717 0.91203 0.88577 0.92187 0.91770 0.89163 0.89883 0.92770 0.92209 0.93005 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.81 71.98 0.71 -4.43 16 2 C -0.10 -3.60 5.64 30.60 0.17 -3.43 16 3 C 0.07 2.87 2.64 30.62 0.08 2.95 16 4 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 5 C -0.14 -4.67 5.42 30.69 0.17 -4.50 16 6 C -0.12 -4.06 6.03 30.71 0.19 -3.87 16 7 C -0.14 -5.98 5.36 30.68 0.16 -5.81 16 8 C 0.22 11.75 2.50 29.88 0.07 11.82 16 9 H -0.03 -1.58 8.14 -2.38 -0.02 -1.60 16 10 C -0.56 -32.58 8.80 25.60 0.23 -32.35 16 11 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 12 C 0.03 1.47 5.40 84.65 0.46 1.93 16 13 N -0.89 -54.64 12.83 21.45 0.28 -54.37 16 14 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 O -0.38 -20.47 8.96 -148.98 -1.34 -21.80 16 19 H 0.03 1.34 7.82 -2.39 -0.02 1.32 16 20 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 23 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -66.08 245.83 4.27 -61.80 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.08 Total: 5.08 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 2.23 Total: -37.70 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.28 Total: -54.37 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -1.34 Total: -21.80 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.08 4.27 -61.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307656566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.621 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds