Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47023 * 2 1 4 4 C 1.53004 * 109.46953 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47381 * 65.00094 * 4 3 2 6 6 C 1.50703 * 109.46843 * 185.00226 * 4 3 2 7 7 H 1.07999 * 119.99890 * 116.80285 * 6 4 3 8 8 C 1.37871 * 119.99996 * 296.80245 * 6 4 3 9 9 N 1.31521 * 120.00147 * 2.19242 * 8 6 4 10 10 Si 1.86801 * 120.00192 * 182.18762 * 8 6 4 11 11 H 1.48505 * 109.46994 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47204 * 120.00237 * 10 8 6 13 13 H 1.48498 * 109.47124 * 240.00140 * 10 8 6 14 14 C 1.53004 * 109.47246 * 304.99662 * 4 3 2 15 15 C 1.52998 * 117.51555 * 106.14298 * 14 4 3 16 16 C 1.52997 * 60.00047 * 107.48358 * 15 14 4 17 17 H 1.08999 * 109.47789 * 299.99721 * 1 2 3 18 18 H 1.09001 * 109.47408 * 60.00185 * 1 2 3 19 19 H 1.09001 * 109.46871 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47789 * 240.00279 * 2 1 3 21 21 H 1.09001 * 109.47408 * 119.99815 * 2 1 3 22 22 H 1.08993 * 109.46887 * 60.00205 * 3 2 1 23 23 H 1.08993 * 109.47136 * 299.99979 * 3 2 1 24 24 H 0.96702 * 113.99662 * 59.99805 * 5 4 3 25 25 H 0.96997 * 120.00236 * 180.02562 * 9 8 6 26 26 H 1.09004 * 115.55021 * 320.44611 * 14 4 3 27 27 H 1.09002 * 117.50282 * 214.97177 * 15 14 4 28 28 H 1.09010 * 117.50056 * 359.97438 * 15 14 4 29 29 H 1.09000 * 117.50164 * 252.51278 * 16 15 14 30 30 H 1.08999 * 117.49891 * 107.48380 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0458 0.8734 -1.2219 6 6 4.0723 2.8580 0.1232 7 1 4.6502 3.1522 0.9868 8 6 3.7940 3.7773 -0.8658 9 7 3.0539 3.4308 -1.8964 10 14 4.4680 5.5151 -0.7423 11 1 5.2651 5.6494 0.5035 12 1 5.3337 5.7948 -1.9159 13 1 3.3415 6.4822 -0.7164 14 6 4.0805 0.6150 1.1807 15 6 4.6716 -0.7627 0.8756 16 6 5.5902 0.3901 1.2857 17 1 -0.3635 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 1.8933 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9563 0.8900 23 1 1.6766 1.9564 -0.8899 24 1 3.7601 1.3480 -2.0146 25 1 2.8585 4.0774 -2.5924 26 1 3.5227 0.7287 2.1103 27 1 4.5029 -1.5555 1.6044 28 1 4.6966 -1.0801 -0.1670 29 1 6.2197 0.8313 0.5130 30 1 6.0256 0.3558 2.2843 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307739361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -46.564273 kcal Electronic energy + Delta-G solvation = -11902.866465 eV Core-core repulsion = 9891.316848 eV Total energy + Delta-G solvation = -2011.549617 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.77455 -34.32281 -32.92108 -31.94273 -28.21992 -25.22520 -22.44513 -21.40700 -20.47958 -18.59127 -16.75902 -15.19942 -14.54467 -14.21471 -13.87061 -13.30980 -12.92946 -12.38074 -11.61247 -11.38388 -11.08838 -10.91953 -10.75885 -10.61334 -10.33093 -10.22605 -9.97796 -9.78480 -9.43157 -9.15825 -8.82208 -8.49744 -7.80880 -6.09649 -4.17965 3.25482 3.34183 3.38916 4.36571 4.89387 5.14482 5.75806 5.86533 5.87842 5.99869 6.03222 6.11719 6.19983 6.46726 6.56848 6.62064 6.68128 6.80747 6.96115 7.11856 7.17581 7.19771 7.38295 7.65644 7.80987 8.06950 8.30044 8.85122 9.50045 9.67482 10.93944 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035409 B = 0.016977 C = 0.012991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.562701 B = 1648.911853 C = 2154.806509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.129 4.129 4 C 0.279 3.721 5 O -0.590 6.590 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.067 3.933 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.115 4.115 15 C -0.183 4.183 16 C -0.175 4.175 17 H 0.044 0.956 18 H 0.048 0.952 19 H 0.038 0.962 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.040 0.960 23 H 0.086 0.914 24 H 0.380 0.620 25 H 0.264 0.736 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -3.958 2.845 5.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.239 3.761 5 O -0.400 6.400 6 C -0.563 4.563 7 H 0.078 0.922 8 C -0.134 4.134 9 N -0.543 5.543 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.133 4.133 15 C -0.220 4.220 16 C -0.212 4.212 17 H 0.063 0.937 18 H 0.067 0.933 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.105 0.895 24 H 0.231 0.769 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.100 -4.305 3.102 5.419 hybrid contribution 0.013 1.467 -0.270 1.491 sum -1.088 -2.838 2.832 4.154 Atomic orbital electron populations 1.21796 0.97939 0.99765 1.01059 1.21543 0.93529 0.99655 1.00997 1.22166 0.98708 0.93418 1.02447 1.18057 0.88457 0.89019 0.80558 1.86044 1.78348 1.58097 1.17525 1.21801 1.33301 0.95116 1.06035 0.92233 1.24991 0.94235 0.98826 0.95307 1.69592 1.38212 1.35529 1.10953 0.86472 0.78789 0.84213 0.78090 1.19784 1.20970 1.21057 1.22284 0.94611 0.96892 0.99545 1.22775 1.06126 0.91402 1.01719 1.22708 0.94519 1.03219 1.00746 0.93659 0.93260 0.94260 0.92579 0.93335 0.94145 0.89514 0.76908 0.92551 0.89252 0.91171 0.88390 0.88806 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 37.15 0.37 -2.16 16 2 C -0.12 -2.38 5.47 -26.73 -0.15 -2.53 16 3 C -0.13 -3.01 4.22 -26.73 -0.11 -3.13 16 4 C 0.28 6.87 0.57 -91.77 -0.05 6.82 16 5 O -0.59 -15.16 10.85 -35.23 -0.38 -15.54 16 6 C -0.52 -14.18 8.01 -34.44 -0.28 -14.45 16 7 H 0.06 1.63 7.75 -52.49 -0.41 1.23 16 8 C 0.07 1.79 5.23 -17.82 -0.09 1.69 16 9 N -0.90 -24.21 9.76 55.43 0.54 -23.67 16 10 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C -0.12 -2.52 3.60 -90.62 -0.33 -2.85 16 15 C -0.18 -3.61 9.60 -26.73 -0.26 -3.86 16 16 C -0.17 -3.58 9.87 -26.73 -0.26 -3.84 16 17 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 18 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 21 H 0.05 0.93 6.88 -51.93 -0.36 0.58 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.09 2.22 6.38 -51.93 -0.33 1.89 16 24 H 0.38 10.11 6.97 45.56 0.32 10.43 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.10 2.06 7.14 -51.92 -0.37 1.69 16 29 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 244.33 15.07 3.68 3.68 Total: -1.00 -26.70 244.33 -6.41 -33.11 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.07 Total: 10.72 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.16 Total: -24.31 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.54 Total: -23.67 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.38 Total: -15.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.70 -6.41 -33.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307739361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.452 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds