Wall clock time and date at job start Mon Mar 30 2020 02:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 113.41120 * 2 1 4 4 N 1.29045 * 120.00125 * 253.19456 * 3 2 1 5 5 O 1.34921 * 119.99937 * 73.20318 * 3 2 1 6 6 C 1.53495 * 114.20448 * 133.19867 * 2 1 3 7 7 N 1.47066 * 87.98658 * 87.51959 * 6 2 1 8 8 C 1.36937 * 136.06113 * 206.85859 * 7 6 2 9 9 H 1.07995 * 120.00001 * 0.02562 * 8 7 6 10 10 C 1.38817 * 120.00320 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99557 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99975 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47363 * 60.00463 * 12 10 8 14 14 H 1.48506 * 109.46719 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47174 * 300.00290 * 12 10 8 16 16 C 1.47067 * 87.88528 * 27.11900 * 7 6 2 17 17 H 1.08990 * 109.47277 * 286.80226 * 1 2 3 18 18 H 1.08997 * 109.46709 * 46.80207 * 1 2 3 19 19 H 1.08999 * 109.46860 * 166.79804 * 1 2 3 20 20 H 0.96996 * 120.00438 * 180.02562 * 4 3 2 21 21 H 0.96699 * 113.99450 * 179.97438 * 5 3 2 22 22 H 1.09005 * 113.46950 * 332.74525 * 6 2 1 23 23 H 1.08998 * 113.47096 * 202.30169 * 6 2 1 24 24 H 0.96999 * 119.99537 * 179.97438 * 11 10 8 25 25 H 1.09007 * 113.46858 * 87.65629 * 16 7 6 26 26 H 1.08993 * 113.47208 * 218.09965 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1288 1.3829 0.0000 4 7 2.6817 1.8467 -1.0698 5 8 2.0870 2.1361 1.1186 6 6 2.1594 -0.9583 1.0206 7 7 2.0802 -2.0144 0.0001 8 6 1.9821 -3.3802 0.0001 9 1 1.9460 -3.9190 0.9353 10 6 1.9279 -4.0722 -1.2021 11 7 1.9713 -3.4155 -2.3419 12 14 1.7933 -5.9353 -1.2020 13 1 0.5507 -6.3419 -0.4979 14 1 1.7534 -6.4287 -2.6021 15 1 2.9694 -6.5166 -0.5061 16 6 2.1594 -0.9585 -1.0205 17 1 -0.3633 0.2970 0.9837 18 1 -0.3633 0.7035 -0.7492 19 1 -0.3633 -1.0005 -0.2347 20 1 3.0675 2.7366 -1.0698 21 1 2.4963 3.0069 1.0219 22 1 1.5267 -1.1451 1.8883 23 1 3.1811 -0.6932 1.2925 24 1 1.9339 -3.8991 -3.1819 25 1 3.1812 -0.6932 -1.2923 26 1 1.5268 -1.1451 -1.8882 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335390838.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:26 Heat of formation + Delta-G solvation = 5.808234 kcal Electronic energy + Delta-G solvation = -11359.200122 eV Core-core repulsion = 9246.381204 eV Total energy + Delta-G solvation = -2112.818918 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.03502 -39.02311 -34.64636 -33.67793 -31.34811 -28.33338 -26.44304 -25.46227 -22.99181 -19.89552 -18.83772 -18.61421 -16.96078 -16.64287 -15.86381 -15.46776 -15.27295 -14.61282 -14.05208 -13.67110 -13.05597 -12.94284 -12.59890 -12.44959 -12.38545 -11.89674 -11.68507 -11.03659 -10.87559 -10.70596 -10.59196 -8.94541 -7.87912 -5.23678 1.38979 1.48920 1.53181 1.59287 2.42864 2.60597 3.28615 3.34697 3.53413 4.10927 4.12893 4.50181 4.73867 4.89281 4.96381 5.00139 5.12114 5.28694 5.30196 5.52930 5.55770 5.91354 6.07893 6.91161 7.54025 7.60621 8.59734 9.29416 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.080116 B = 0.011071 C = 0.010661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.407738 B = 2528.589991 C = 2625.695976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.042 4.042 3 C 0.394 3.606 4 N -0.764 5.764 5 O -0.523 6.523 6 C 0.136 3.864 7 N -0.636 5.636 8 C -0.234 4.234 9 H 0.091 0.909 10 C -0.066 4.066 11 N -0.953 5.953 12 Si 0.985 3.015 13 H -0.272 1.272 14 H -0.295 1.295 15 H -0.278 1.278 16 C 0.189 3.811 17 H 0.081 0.919 18 H 0.063 0.937 19 H 0.053 0.947 20 H 0.348 0.652 21 H 0.411 0.589 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.249 0.751 25 H 0.014 0.986 26 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 9.374 6.388 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.045 4.045 3 C 0.163 3.837 4 N -0.411 5.411 5 O -0.319 6.319 6 C 0.010 3.990 7 N -0.361 5.361 8 C -0.361 4.361 9 H 0.108 0.892 10 C -0.259 4.259 11 N -0.601 5.601 12 Si 0.812 3.188 13 H -0.197 1.197 14 H -0.221 1.221 15 H -0.204 1.204 16 C 0.063 3.937 17 H 0.100 0.900 18 H 0.082 0.918 19 H 0.072 0.928 20 H 0.167 0.833 21 H 0.268 0.732 22 H 0.085 0.915 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.656 8.197 5.765 10.157 hybrid contribution 0.759 0.402 0.064 0.861 sum -0.897 8.599 5.830 10.428 Atomic orbital electron populations 1.21286 0.89617 1.02143 1.02723 1.21316 0.97515 0.84837 1.00808 1.24024 0.87777 0.91723 0.80137 1.69689 1.20850 1.22167 1.28379 1.84841 1.77370 1.31724 1.37984 1.22504 0.97625 0.85852 0.92985 1.45839 1.85208 1.01078 1.04008 1.19326 1.43090 0.80330 0.93370 0.89174 1.25719 1.02596 1.02830 0.94789 1.70046 1.57443 1.35704 0.96903 0.85070 0.78403 0.79086 0.76240 1.19738 1.22135 1.20353 1.21781 0.96058 0.83381 0.92524 0.90029 0.91811 0.92830 0.83312 0.73180 0.91538 0.94375 0.94172 0.96799 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.48 9.22 71.98 0.66 -2.82 15 2 C -0.04 -1.64 1.46 -52.59 -0.08 -1.72 15 3 C 0.39 12.76 7.15 88.52 0.63 13.39 15 4 N -0.76 -25.16 13.23 -166.06 -2.20 -27.36 15 5 O -0.52 -12.77 13.58 -81.90 -1.11 -13.88 15 6 C 0.14 5.72 7.83 83.18 0.65 6.37 15 7 N -0.64 -33.67 3.59 -738.34 -2.65 -36.32 15 8 C -0.23 -13.29 10.75 84.03 0.90 -12.39 15 9 H 0.09 4.82 7.83 -2.91 -0.02 4.79 15 10 C -0.07 -3.83 5.50 84.86 0.47 -3.36 15 11 N -0.95 -59.00 11.51 21.65 0.25 -58.75 15 12 Si 0.98 46.01 29.55 68.60 2.03 48.04 15 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 14 H -0.30 -13.92 7.11 99.48 0.71 -13.21 15 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 16 C 0.19 9.58 6.14 83.18 0.51 10.09 15 17 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 18 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 19 H 0.05 2.17 7.92 -2.39 -0.02 2.15 15 20 H 0.35 8.68 8.56 -92.71 -0.79 7.88 15 21 H 0.41 5.53 8.70 -74.06 -0.64 4.88 15 22 H 0.07 2.53 8.12 -2.38 -0.02 2.51 15 23 H 0.04 1.57 8.10 -2.39 -0.02 1.55 15 24 H 0.25 14.99 8.31 -92.71 -0.77 14.22 15 25 H 0.01 0.77 7.87 -2.38 -0.02 0.75 15 26 H 0.04 2.47 7.09 -2.39 -0.02 2.45 15 Total: -1.00 -69.34 229.59 -0.17 -69.51 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -0.24 Total: 9.21 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.75 Total: 9.55 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -4.60 Total: -122.43 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.11 Total: -13.88 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -69.34 -0.17 -69.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335390838.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.319 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds