Wall clock time and date at job start Mon Mar 30 2020 01:45:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86793 * 120.00192 * 2 1
4 4 H 1.48497 * 109.47655 * 270.00159 * 3 2 1
5 5 H 1.48498 * 109.47256 * 30.00577 * 3 2 1
6 6 H 1.48509 * 109.47091 * 150.00045 * 3 2 1
7 7 C 1.37885 * 119.99601 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99466 * 180.02562 * 7 2 1
9 9 C 1.50695 * 119.99957 * 0.27298 * 7 2 1
10 10 C 1.50708 * 109.47012 * 179.72804 * 9 7 2
11 11 C 1.30998 * 120.00034 * 234.16357 * 10 9 7
12 12 C 1.50701 * 119.99861 * 354.10093 * 11 10 9
13 13 H 1.09004 * 115.71535 * 328.77312 * 12 11 10
14 14 O 1.42901 * 117.77280 * 181.74805 * 12 11 10
15 15 C 1.42904 * 64.72838 * 253.15564 * 14 12 11
16 16 H 1.08998 * 117.81928 * 106.82289 * 15 14 12
17 17 C 1.53008 * 117.76983 * 253.15688 * 15 14 12
18 18 O 1.42898 * 109.47042 * 241.01721 * 17 15 14
19 19 H 0.96998 * 119.99392 * 359.97438 * 1 2 3
20 20 H 1.08999 * 109.47196 * 299.71975 * 9 7 2
21 21 H 1.08996 * 109.47290 * 59.72977 * 9 7 2
22 22 H 1.08001 * 119.99846 * 54.15887 * 10 9 7
23 23 H 1.07994 * 119.99982 * 174.09776 * 11 10 9
24 24 H 1.08995 * 109.47261 * 1.01701 * 17 15 14
25 25 H 1.08995 * 109.46984 * 121.01695 * 17 15 14
26 26 H 0.96698 * 114.00059 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4468 2.6526 0.7001
6 1 3.5468 1.4400 0.7001
7 6 2.0045 -1.1942 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0073
10 6 2.2302 -3.6447 -0.0133
11 6 2.1510 -4.5694 -0.9378
12 6 1.0034 -4.5619 -1.9145
13 1 0.0616 -4.1656 -1.5347
14 8 0.9431 -5.6145 -2.8791
15 6 1.3268 -4.3374 -3.3929
16 1 2.3715 -4.1927 -3.6680
17 6 0.3058 -3.5728 -4.2380
18 8 0.8336 -3.3643 -5.5494
19 1 -0.4849 0.8401 0.0004
20 1 0.6244 -2.5616 0.8824
21 1 0.6243 -2.5523 -0.8976
22 1 2.9974 -3.7032 0.7447
23 1 2.9081 -5.3369 -1.0001
24 1 -0.6160 -4.1507 -4.3050
25 1 0.0976 -2.6094 -3.7726
26 1 0.2381 -2.8847 -6.1414
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000388121801.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:45:09
Heat of formation + Delta-G solvation = -74.397115 kcal
Electronic energy + Delta-G solvation = -10810.140092 eV
Core-core repulsion = 8661.550457 eV
Total energy + Delta-G solvation = -2148.589634 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 184.089 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-41.57742 -37.56605 -36.47339 -34.24326 -29.83882 -29.58646 -26.12253 -24.64506
-22.72013 -19.87536 -18.60099 -18.31252 -17.21763 -16.86069 -16.45612 -16.01996
-15.15074 -14.40740 -14.34854 -14.16327 -13.54987 -13.30491 -12.78467 -12.40844
-12.30102 -12.11031 -11.62179 -11.41593 -11.13238 -10.98262 -10.54756 -9.62862
-8.17494 -6.27572 1.18969 1.44419 1.45352 1.55795 2.44186 2.68002
2.94701 3.15995 3.33834 3.85784 3.98334 4.08129 4.23463 4.28688
4.62904 4.64900 4.85177 5.01235 5.38381 5.47248 5.70268 5.79698
6.03200 6.28500 6.81773 6.86180 7.40522 8.93085
Molecular weight = 184.09amu
Principal moments of inertia in cm(-1)
A = 0.037377 B = 0.010967 C = 0.009304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 748.945831 B = 2552.570503 C = 3008.606257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.007 3.993
3 Si 0.960 3.040
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.266 1.266
7 C -0.534 4.534
8 H 0.059 0.941
9 C 0.031 3.969
10 C -0.092 4.092
11 C -0.193 4.193
12 C 0.043 3.957
13 H 0.130 0.870
14 O -0.374 6.374
15 C -0.008 4.008
16 H 0.129 0.871
17 C 0.095 3.905
18 O -0.584 6.584
19 H 0.264 0.736
20 H 0.006 0.994
21 H 0.021 0.979
22 H 0.120 0.880
23 H 0.126 0.874
24 H 0.067 0.933
25 H 0.071 0.929
26 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.137 -3.901 -5.982 7.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.192 4.192
3 Si 0.785 3.215
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.190 1.190
7 C -0.572 4.572
8 H 0.077 0.923
9 C -0.005 4.005
10 C -0.110 4.110
11 C -0.212 4.212
12 C -0.013 4.013
13 H 0.147 0.853
14 O -0.295 6.295
15 C -0.065 4.065
16 H 0.146 0.854
17 C 0.017 3.983
18 O -0.393 6.393
19 H 0.073 0.927
20 H 0.024 0.976
21 H 0.040 0.960
22 H 0.138 0.862
23 H 0.144 0.856
24 H 0.085 0.915
25 H 0.089 0.911
26 H 0.255 0.745
Dipole moment (debyes) X Y Z Total
from point charges 1.419 -4.459 -5.803 7.455
hybrid contribution -0.299 0.963 -0.102 1.014
sum 1.120 -3.496 -5.905 6.953
Atomic orbital electron populations
1.70062 1.07486 1.27785 1.51424 1.25845 0.95735 1.02848 0.94745
0.85513 0.78708 0.78802 0.78441 1.19875 1.20849 1.18994 1.21455
0.93481 0.91491 1.50751 0.92269 1.18385 0.93991 0.91548 0.96587
1.23187 0.98502 0.93247 0.96061 1.22140 0.98927 1.01994 0.98095
1.22619 1.00206 0.91928 0.86578 0.85267 1.91567 1.89923 1.18605
1.29450 1.23707 1.00793 0.87487 0.94526 0.85359 1.21876 0.94162
0.98948 0.83268 1.86364 1.48893 1.80868 1.23201 0.92694 0.97570
0.96037 0.86232 0.85572 0.91493 0.91106 0.74480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.40 13.29 21.45 0.28 -53.11 15
2 C 0.01 0.36 5.46 84.66 0.46 0.82 15
3 Si 0.96 42.60 29.54 68.60 2.03 44.62 15
4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15
5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15
6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15
7 C -0.53 -28.97 9.09 25.60 0.23 -28.73 15
8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 15
9 C 0.03 1.56 5.12 29.10 0.15 1.71 15
10 C -0.09 -3.71 9.45 25.65 0.24 -3.47 15
11 C -0.19 -7.06 9.92 25.65 0.25 -6.80 15
12 C 0.04 1.59 5.44 29.85 0.16 1.75 15
13 H 0.13 4.85 6.83 -2.38 -0.02 4.84 15
14 O -0.37 -14.11 14.42 -148.98 -2.15 -16.26 15
15 C -0.01 -0.29 6.65 30.59 0.20 -0.08 15
16 H 0.13 4.35 8.14 -2.39 -0.02 4.33 15
17 C 0.10 2.83 7.46 71.98 0.54 3.36 15
18 O -0.58 -15.83 13.66 -148.98 -2.03 -17.86 15
19 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15
20 H 0.01 0.33 8.14 -2.39 -0.02 0.31 15
21 H 0.02 1.09 5.71 -2.39 -0.01 1.08 15
22 H 0.12 4.38 8.06 -2.91 -0.02 4.36 15
23 H 0.13 4.06 8.06 -2.91 -0.02 4.03 15
24 H 0.07 1.80 8.13 -2.39 -0.02 1.78 15
25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15
26 H 0.40 6.52 9.12 -74.06 -0.68 5.85 15
Total: -1.00 -62.85 237.18 0.87 -61.98
By element:
Atomic # 1 Polarization: 11.57 SS G_CDS: 0.50 Total: 12.06 kcal
Atomic # 6 Polarization: -33.68 SS G_CDS: 2.24 Total: -31.44 kcal
Atomic # 7 Polarization: -53.40 SS G_CDS: 0.28 Total: -53.11 kcal
Atomic # 8 Polarization: -29.93 SS G_CDS: -4.18 Total: -34.12 kcal
Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal
Total: -62.85 0.87 -61.98 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388121801.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.420 kcal
(2) G-P(sol) polarization free energy of solvation -62.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.266 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.977 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds