Wall clock time and date at job start Mon Mar 30 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00059 * 2 1 4 4 H 1.07997 * 119.99597 * 154.64216 * 3 2 1 5 5 C 1.38818 * 120.00016 * 334.64332 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.00312 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.00046 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46501 * 120.00061 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.43651 * 180.69641 * 11 2 1 13 13 C 1.54630 * 110.48574 * 58.15499 * 11 2 1 14 14 C 1.54687 * 101.66993 * 216.60653 * 13 11 2 15 15 N 1.46762 * 105.53333 * 25.26278 * 14 13 11 16 16 C 1.34425 * 111.30093 * 343.07544 * 15 14 13 17 17 O 1.21277 * 124.94413 * 180.44549 * 16 15 14 18 18 H 1.08996 * 109.47221 * 84.47222 * 1 2 3 19 19 H 1.09007 * 109.46887 * 324.47135 * 1 2 3 20 20 H 1.08991 * 109.47169 * 204.47504 * 1 2 3 21 21 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 22 22 H 1.09008 * 110.96869 * 334.64373 * 13 11 2 23 23 H 1.08997 * 110.97048 * 98.40403 * 13 11 2 24 24 H 1.08996 * 110.14061 * 266.27732 * 14 13 11 25 25 H 1.09002 * 110.36772 * 144.36003 * 14 13 11 26 26 H 0.97005 * 124.35162 * 163.05886 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1516 1.2309 0.4006 5 6 1.5559 2.3302 -0.5148 6 7 0.3076 2.2938 -0.9305 7 14 2.5287 3.9216 -0.6176 8 1 3.7214 3.7180 -1.4784 9 1 1.6738 4.9875 -1.1994 10 1 2.9637 4.3248 0.7438 11 6 2.1975 -1.2687 -0.0006 12 1 3.2723 -1.0877 0.0119 13 6 1.8063 -2.1190 -1.2314 14 6 1.8266 -3.5494 -0.6429 15 7 1.5832 -3.3862 0.7952 16 6 1.7895 -2.1161 1.1843 17 8 1.6670 -1.7090 2.3201 18 1 -0.3633 0.0990 -1.0228 19 1 -0.3633 0.8364 0.5972 20 1 -0.3633 -0.9352 0.4257 21 1 -0.1071 3.0933 -1.2906 22 1 0.8089 -1.8573 -1.5852 23 1 2.5417 -2.0125 -2.0288 24 1 2.7998 -4.0105 -0.8108 25 1 1.0400 -4.1557 -1.0921 26 1 1.3084 -4.1027 1.3886 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575461052.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:53 Heat of formation + Delta-G solvation = -32.176000 kcal Electronic energy + Delta-G solvation = -11544.070928 eV Core-core repulsion = 9429.604890 eV Total energy + Delta-G solvation = -2114.466038 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.16385 -37.50190 -36.68051 -33.35757 -30.73754 -28.28160 -27.82448 -24.31438 -22.50422 -20.68094 -19.01527 -18.25968 -17.30337 -16.65517 -15.85658 -15.16337 -14.95579 -14.63430 -14.45983 -13.80263 -13.22622 -13.05981 -12.67598 -12.56614 -12.45391 -12.15760 -11.96217 -11.78677 -10.96548 -10.56429 -9.96360 -8.79032 -7.86257 -5.36284 1.47352 1.50970 1.56782 1.66639 2.46372 2.60382 3.27721 3.52602 3.81508 3.99434 4.26616 4.32136 4.68856 4.76562 4.85238 5.20155 5.29195 5.35173 5.59749 5.68453 5.99846 6.12593 6.30401 7.10725 7.41583 7.78738 8.23464 9.17721 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.064481 B = 0.012490 C = 0.012179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.134735 B = 2241.228062 C = 2298.494651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.192 3.808 2 N -0.598 5.598 3 C -0.273 4.273 4 H 0.069 0.931 5 C -0.047 4.047 6 N -0.938 5.938 7 Si 0.978 3.022 8 H -0.269 1.269 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.134 3.866 12 H 0.100 0.900 13 C -0.141 4.141 14 C 0.112 3.888 15 N -0.723 5.723 16 C 0.492 3.508 17 O -0.586 6.586 18 H 0.018 0.982 19 H 0.017 0.983 20 H 0.002 0.998 21 H 0.251 0.749 22 H 0.065 0.935 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -11.371 -3.258 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.321 5.321 3 C -0.403 4.403 4 H 0.087 0.913 5 C -0.242 4.242 6 N -0.584 5.584 7 Si 0.805 3.195 8 H -0.194 1.194 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.023 3.977 12 H 0.118 0.882 13 C -0.181 4.181 14 C -0.012 4.012 15 N -0.379 5.379 16 C 0.277 3.723 17 O -0.466 6.466 18 H 0.036 0.964 19 H 0.036 0.964 20 H 0.020 0.980 21 H 0.060 0.940 22 H 0.084 0.916 23 H 0.123 0.877 24 H 0.118 0.882 25 H 0.122 0.878 26 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.308 -10.926 -2.829 11.761 hybrid contribution -0.031 0.792 0.433 0.903 sum 3.277 -10.134 -2.396 10.917 Atomic orbital electron populations 1.20461 0.82649 0.94503 0.97656 1.43831 1.01877 1.00654 1.85707 1.19533 0.99331 0.87683 1.33760 0.91329 1.25928 0.97511 1.02036 0.98729 1.70247 1.12533 1.28737 1.46853 0.85202 0.77995 0.78516 0.77832 1.19387 1.21637 1.20908 1.21327 0.97848 0.85978 0.92571 0.88236 1.23097 1.03358 0.93854 0.97772 1.22284 1.03956 0.96745 0.78192 1.46182 1.69411 1.09934 1.12414 1.22376 0.75187 0.84574 0.90158 1.90619 1.54397 1.77276 1.24274 0.96418 0.96435 0.97970 0.94011 0.91603 0.87749 0.88175 0.87846 0.74748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.28 7.71 127.77 0.99 11.27 15 2 N -0.60 -31.66 2.91 -702.82 -2.04 -33.70 15 3 C -0.27 -15.67 9.61 84.03 0.81 -14.86 15 4 H 0.07 3.83 7.82 -2.91 -0.02 3.81 15 5 C -0.05 -2.69 5.38 84.86 0.46 -2.24 15 6 N -0.94 -56.08 10.13 21.65 0.22 -55.86 15 7 Si 0.98 45.73 29.56 68.60 2.03 47.76 15 8 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 9 H -0.29 -13.50 7.11 99.48 0.71 -12.80 15 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 11 C 0.13 5.56 3.41 44.98 0.15 5.71 15 12 H 0.10 4.00 7.93 -2.39 -0.02 3.99 15 13 C -0.14 -4.24 6.79 31.72 0.22 -4.02 15 14 C 0.11 2.31 7.79 86.90 0.68 2.98 15 15 N -0.72 -20.21 6.24 -459.45 -2.87 -23.07 15 16 C 0.49 20.16 6.93 87.90 0.61 20.77 15 17 O -0.59 -30.01 18.02 -3.02 -0.05 -30.06 15 18 H 0.02 0.97 7.41 -2.39 -0.02 0.95 15 19 H 0.02 1.02 7.04 -2.38 -0.02 1.01 15 20 H 0.00 0.09 7.19 -2.39 -0.02 0.08 15 21 H 0.25 14.48 8.31 -92.71 -0.77 13.71 15 22 H 0.07 2.24 7.14 -2.38 -0.02 2.23 15 23 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.41 9.48 8.96 -92.70 -0.83 8.64 15 Total: -1.00 -73.15 222.01 1.54 -71.61 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 0.35 Total: 3.73 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 3.90 Total: 19.61 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -4.69 Total: -112.64 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.15 1.54 -71.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575461052.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.438 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds