Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 120.00080 * 2 1 4 4 H 1.48500 * 109.46738 * 269.99581 * 3 2 1 5 5 H 1.48499 * 109.46727 * 29.99067 * 3 2 1 6 6 H 1.48495 * 109.47196 * 149.99333 * 3 2 1 7 7 C 1.38953 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00013 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00111 * 180.02562 * 7 2 1 10 10 C 1.34768 * 120.00427 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99629 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00434 * 180.02562 * 10 9 7 13 13 H 1.09002 * 112.84782 * 309.66555 * 12 10 9 14 14 C 1.53786 * 113.61519 * 80.85965 * 12 10 9 15 15 C 1.53962 * 87.01719 * 89.23113 * 14 12 10 16 16 H 1.08997 * 113.53543 * 270.80998 * 15 14 12 17 17 N 1.46899 * 113.73975 * 139.94692 * 15 14 12 18 18 C 1.53781 * 113.61630 * 178.46913 * 12 10 9 19 19 H 0.97002 * 119.99798 * 0.02562 * 1 2 3 20 20 H 0.97004 * 119.99573 * 0.02562 * 9 7 2 21 21 H 1.08993 * 113.61491 * 203.75234 * 14 12 10 22 22 H 1.09000 * 113.61138 * 334.65572 * 14 12 10 23 23 H 1.00894 * 111.00132 * 82.40433 * 17 15 14 24 24 H 1.00896 * 110.99524 * 206.35509 * 17 15 14 25 25 H 1.09001 * 113.61695 * 25.34764 * 18 12 10 26 26 H 1.08997 * 113.61223 * 156.25347 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7002 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0022 13 1 5.9846 -1.7290 -0.7704 14 6 6.1757 -2.1473 1.3940 15 6 6.1245 -3.6756 1.5732 16 1 5.1887 -4.0323 2.0033 17 7 7.3083 -4.2327 2.2412 18 6 6.1767 -3.7791 0.0397 19 1 -0.4850 0.8401 -0.0004 20 1 3.8648 -0.3633 0.0014 21 1 7.1882 -1.7448 1.3645 22 1 5.5231 -1.6046 2.0778 23 1 7.2329 -4.1445 3.2435 24 1 7.4559 -5.1941 1.9730 25 1 5.5250 -4.5517 -0.3682 26 1 7.1895 -3.8235 -0.3606 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575487411.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = -19.589063 kcal Electronic energy + Delta-G solvation = -11155.629054 eV Core-core repulsion = 9041.708826 eV Total energy + Delta-G solvation = -2113.920228 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.60078 -36.86942 -33.94680 -31.91542 -31.51034 -25.90291 -25.30813 -23.31171 -20.30028 -18.92852 -17.59323 -16.28890 -15.44757 -15.11938 -14.99979 -14.43411 -13.47145 -13.15042 -12.70317 -12.30301 -12.02986 -11.36558 -11.15632 -11.13896 -10.59034 -10.37052 -9.99298 -9.94599 -9.57503 -8.62882 -8.49879 -8.18639 -6.32214 -3.83468 3.03948 3.08032 3.15546 3.69907 4.10178 4.52887 4.74148 4.88985 5.01266 5.11257 5.34622 5.51282 5.91816 5.99288 6.01954 6.18318 6.36713 6.49489 6.58536 7.29934 7.49496 7.57196 8.14553 8.59147 8.93817 9.42761 9.83490 10.80836 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.067238 B = 0.010904 C = 0.010081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.329642 B = 2567.345182 C = 2776.825674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.119 0.881 9 N -0.585 5.585 10 C 0.466 3.534 11 O -0.578 6.578 12 C -0.130 4.130 13 H 0.089 0.911 14 C -0.116 4.116 15 C 0.059 3.941 16 H 0.069 0.931 17 N -0.841 5.841 18 C -0.111 4.111 19 H 0.274 0.726 20 H 0.372 0.628 21 H 0.090 0.910 22 H 0.066 0.934 23 H 0.336 0.664 24 H 0.338 0.662 25 H 0.079 0.921 26 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 -1.312 2.315 12.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.137 0.863 9 N -0.223 5.223 10 C 0.252 3.748 11 O -0.462 6.462 12 C -0.153 4.153 13 H 0.108 0.892 14 C -0.155 4.155 15 C -0.052 4.052 16 H 0.087 0.913 17 N -0.370 5.370 18 C -0.149 4.149 19 H 0.084 0.916 20 H 0.205 0.795 21 H 0.109 0.891 22 H 0.085 0.915 23 H 0.148 0.852 24 H 0.150 0.850 25 H 0.098 0.902 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.413 -1.325 1.916 12.630 hybrid contribution -0.171 0.800 0.444 0.930 sum 12.243 -0.526 2.359 12.479 Atomic orbital electron populations 1.69626 1.05669 1.27548 1.49227 1.25046 0.95496 0.98021 0.97517 0.86677 0.79878 0.83951 0.79009 1.19529 1.20127 1.19340 1.19460 0.79339 0.96637 1.48157 0.86323 1.42188 1.07441 1.06284 1.66349 1.19324 0.87603 0.84343 0.83514 1.90536 1.69582 1.31181 1.54859 1.22206 0.94464 0.99502 0.99087 0.89250 1.22988 1.00857 0.95990 0.95652 1.22885 0.91696 0.95637 0.94980 0.91346 1.58946 1.41186 1.24622 1.12271 1.22804 1.00349 0.96798 0.94945 0.91587 0.79515 0.89149 0.91480 0.85217 0.84951 0.90227 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.96 55.50 0.77 -25.13 15 2 C 0.04 1.17 5.50 -17.47 -0.10 1.08 15 3 Si 0.88 19.60 27.74 -169.99 -4.72 14.89 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.27 -5.49 6.52 56.52 0.37 -5.12 15 7 C -0.31 -8.82 10.16 -14.93 -0.15 -8.97 15 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 15 9 N -0.58 -14.31 5.09 -10.96 -0.06 -14.37 15 10 C 0.47 10.88 7.03 -10.99 -0.08 10.80 15 11 O -0.58 -15.74 15.41 5.54 0.09 -15.65 15 12 C -0.13 -2.28 4.34 -90.96 -0.39 -2.68 15 13 H 0.09 1.38 8.14 -51.93 -0.42 0.95 15 14 C -0.12 -1.80 7.48 -25.82 -0.19 -1.99 15 15 C 0.06 0.91 4.63 -66.80 -0.31 0.60 15 16 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 17 N -0.84 -10.25 9.58 -3.90 -0.04 -10.29 15 18 C -0.11 -1.75 7.25 -25.92 -0.19 -1.94 15 19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.37 8.07 5.76 -40.82 -0.24 7.84 15 21 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.07 1.09 8.09 -51.93 -0.42 0.67 15 23 H 0.34 3.60 9.08 -39.30 -0.36 3.24 15 24 H 0.34 3.61 9.07 -39.29 -0.36 3.25 15 25 H 0.08 1.40 7.41 -51.93 -0.38 1.02 15 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 226.56 15.07 3.41 3.41 Total: -1.00 -31.77 226.56 -4.94 -36.71 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -3.00 Total: 13.53 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.41 Total: -3.11 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.68 Total: -49.79 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.72 Total: 14.89 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.77 -4.94 -36.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575487411.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.122 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds