Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 120.00080 * 2 1 4 4 H 1.48500 * 109.46738 * 269.99581 * 3 2 1 5 5 H 1.48499 * 109.46727 * 29.99067 * 3 2 1 6 6 H 1.48495 * 109.47196 * 149.99333 * 3 2 1 7 7 C 1.38953 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00013 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00111 * 180.02562 * 7 2 1 10 10 C 1.34768 * 120.00427 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99629 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00434 * 180.02562 * 10 9 7 13 13 H 1.09002 * 112.84782 * 309.66555 * 12 10 9 14 14 C 1.53786 * 113.61519 * 80.85965 * 12 10 9 15 15 C 1.53962 * 87.01719 * 89.23113 * 14 12 10 16 16 H 1.08997 * 113.53543 * 270.80998 * 15 14 12 17 17 N 1.46899 * 113.73975 * 139.94692 * 15 14 12 18 18 C 1.53781 * 113.61630 * 178.46913 * 12 10 9 19 19 H 0.97002 * 119.99798 * 0.02562 * 1 2 3 20 20 H 0.97004 * 119.99573 * 0.02562 * 9 7 2 21 21 H 1.08993 * 113.61491 * 203.75234 * 14 12 10 22 22 H 1.09000 * 113.61138 * 334.65572 * 14 12 10 23 23 H 1.00894 * 111.00132 * 82.40433 * 17 15 14 24 24 H 1.00896 * 110.99524 * 206.35509 * 17 15 14 25 25 H 1.09001 * 113.61695 * 25.34764 * 18 12 10 26 26 H 1.08997 * 113.61223 * 156.25347 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7002 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0022 13 1 5.9846 -1.7290 -0.7704 14 6 6.1757 -2.1473 1.3940 15 6 6.1245 -3.6756 1.5732 16 1 5.1887 -4.0323 2.0033 17 7 7.3083 -4.2327 2.2412 18 6 6.1767 -3.7791 0.0397 19 1 -0.4850 0.8401 -0.0004 20 1 3.8648 -0.3633 0.0014 21 1 7.1882 -1.7448 1.3645 22 1 5.5231 -1.6046 2.0778 23 1 7.2329 -4.1445 3.2435 24 1 7.4559 -5.1941 1.9730 25 1 5.5250 -4.5517 -0.3682 26 1 7.1895 -3.8235 -0.3606 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575487411.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = -45.818859 kcal Electronic energy + Delta-G solvation = -11156.766463 eV Core-core repulsion = 9041.708826 eV Total energy + Delta-G solvation = -2115.057637 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.19547 -38.51736 -36.01382 -33.81009 -32.87763 -27.77755 -26.56825 -24.95090 -21.91516 -20.88665 -19.34286 -17.81937 -16.96959 -16.56161 -16.41517 -15.99862 -15.26986 -14.96913 -14.54641 -14.22780 -13.24251 -13.04089 -12.59165 -12.53245 -12.44552 -11.98236 -11.65335 -11.54583 -11.23706 -10.43642 -10.29109 -9.68958 -8.45186 -6.06618 1.29189 1.33461 1.43126 1.87843 2.20558 2.85606 3.09843 3.62175 3.67007 3.71010 3.87350 4.10558 4.43158 4.65960 4.87107 4.93949 5.08771 5.19320 5.34848 5.53690 5.91257 6.23725 6.54376 6.60632 6.82828 7.35413 7.91255 8.72388 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.067238 B = 0.010904 C = 0.010081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.329642 B = 2567.345182 C = 2776.825674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.963 3.037 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.055 0.945 9 N -0.585 5.585 10 C 0.463 3.537 11 O -0.626 6.626 12 C -0.131 4.131 13 H 0.124 0.876 14 C -0.102 4.102 15 C 0.059 3.941 16 H 0.031 0.969 17 N -0.829 5.829 18 C -0.104 4.104 19 H 0.280 0.720 20 H 0.390 0.610 21 H 0.124 0.876 22 H 0.056 0.944 23 H 0.346 0.654 24 H 0.348 0.652 25 H 0.052 0.948 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.033 0.626 2.452 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.211 4.211 3 Si 0.783 3.217 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.156 1.156 7 C -0.463 4.463 8 H 0.073 0.927 9 N -0.224 5.224 10 C 0.252 3.748 11 O -0.513 6.513 12 C -0.153 4.153 13 H 0.142 0.858 14 C -0.141 4.141 15 C -0.053 4.053 16 H 0.049 0.951 17 N -0.359 5.359 18 C -0.142 4.142 19 H 0.090 0.910 20 H 0.226 0.774 21 H 0.143 0.857 22 H 0.075 0.925 23 H 0.159 0.841 24 H 0.162 0.838 25 H 0.071 0.929 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.823 0.596 2.062 15.967 hybrid contribution -1.280 0.040 0.410 1.345 sum 14.542 0.636 2.472 14.765 Atomic orbital electron populations 1.69801 1.08126 1.29390 1.49889 1.26122 0.96474 1.02706 0.95792 0.85388 0.79496 0.76697 0.80148 1.17911 1.19693 1.15594 1.19045 0.81494 0.95016 1.50755 0.92700 1.42020 1.05801 1.07618 1.66995 1.20532 0.90339 0.83140 0.80796 1.90515 1.71548 1.32993 1.56212 1.22188 0.89526 1.01729 1.01901 0.85777 1.22998 1.02039 0.95629 0.93392 1.22686 0.91388 0.96222 0.94972 0.95064 1.58919 1.38700 1.25368 1.12939 1.22839 1.01314 0.94819 0.95192 0.90996 0.77414 0.85742 0.92501 0.84082 0.83841 0.92917 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.96 21.66 0.30 -56.26 15 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 15 3 Si 0.96 39.20 27.74 68.60 1.90 41.10 15 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 15 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 15 6 H -0.23 -8.08 6.52 99.48 0.65 -7.43 15 7 C -0.33 -19.97 10.16 84.04 0.85 -19.12 15 8 H 0.05 3.89 7.39 -2.91 -0.02 3.87 15 9 N -0.58 -28.54 5.09 -306.99 -1.56 -30.10 15 10 C 0.46 21.78 7.03 87.66 0.62 22.39 15 11 O -0.63 -35.76 15.41 -3.10 -0.05 -35.80 15 12 C -0.13 -4.26 4.34 -11.01 -0.05 -4.31 15 13 H 0.12 3.24 8.14 -2.39 -0.02 3.22 15 14 C -0.10 -2.81 7.48 31.18 0.23 -2.57 15 15 C 0.06 1.71 4.63 45.50 0.21 1.92 15 16 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 17 N -0.83 -17.69 9.58 -166.24 -1.59 -19.29 15 18 C -0.10 -3.05 7.25 31.12 0.23 -2.82 15 19 H 0.28 15.49 8.31 -92.71 -0.77 14.72 15 20 H 0.39 15.94 5.76 -92.71 -0.53 15.41 15 21 H 0.12 2.68 8.14 -2.39 -0.02 2.66 15 22 H 0.06 1.70 8.09 -2.39 -0.02 1.68 15 23 H 0.35 6.45 9.08 -89.70 -0.81 5.63 15 24 H 0.35 6.46 9.07 -89.70 -0.81 5.64 15 25 H 0.05 1.84 7.41 -2.39 -0.02 1.83 15 26 H 0.12 2.74 8.14 -2.39 -0.02 2.72 15 Total: -1.00 -73.83 226.56 0.56 -73.28 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -1.01 Total: 31.79 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 2.56 Total: -4.71 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -2.85 Total: -105.65 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.05 Total: -35.80 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.10 kcal Total: -73.83 0.56 -73.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575487411.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.457 kcal (2) G-P(sol) polarization free energy of solvation -73.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds