Wall clock time and date at job start Mon Mar 30 2020 01:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48500 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46893 * 299.99819 * 3 2 1 6 6 H 1.48493 * 109.47057 * 59.99878 * 3 2 1 7 7 C 1.38954 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 179.72415 * 7 2 1 9 9 N 1.37105 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 H 1.08998 * 112.85179 * 50.33073 * 12 10 9 14 14 C 1.53777 * 113.61463 * 181.52326 * 12 10 9 15 15 C 1.53787 * 87.08159 * 139.98026 * 14 12 10 16 16 H 1.08999 * 113.61175 * 89.20127 * 15 14 12 17 17 N 1.46904 * 113.61268 * 220.02257 * 15 14 12 18 18 C 1.53782 * 113.61536 * 279.13374 * 12 10 9 19 19 H 0.97000 * 119.99308 * 0.02562 * 1 2 3 20 20 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 21 21 H 1.08998 * 113.61992 * 254.53016 * 14 12 10 22 22 H 1.09001 * 113.61383 * 25.34962 * 14 12 10 23 23 H 1.00902 * 110.99331 * 179.97438 * 17 15 14 24 24 H 1.00893 * 110.99814 * 303.94975 * 17 15 14 25 25 H 1.09004 * 113.61203 * 334.57007 * 18 12 10 26 26 H 1.08999 * 113.61356 * 105.46831 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 -0.0045 11 8 3.2100 -3.5579 -0.0095 12 6 1.2436 -4.8629 -0.0039 13 1 0.4735 -4.9074 -0.7740 14 6 2.1554 -6.1008 0.0273 15 6 1.1435 -6.7243 1.0032 16 1 0.3459 -7.2794 0.5095 17 7 1.7694 -7.4773 2.0984 18 6 0.7476 -5.2873 1.3885 19 1 -0.4849 0.8401 -0.0004 20 1 0.3533 -2.3907 0.0043 21 1 2.2181 -6.6213 -0.9283 22 1 3.1329 -5.9120 0.4714 23 1 1.0714 -7.8680 2.7135 24 1 2.3795 -8.1965 1.7402 25 1 1.3389 -4.8759 2.2066 26 1 -0.3246 -5.1519 1.5300 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575494853.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:48 Heat of formation + Delta-G solvation = -51.997106 kcal Electronic energy + Delta-G solvation = -11030.749492 eV Core-core repulsion = 8915.423946 eV Total energy + Delta-G solvation = -2115.325546 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.90711 -38.57273 -35.95853 -33.35874 -32.79139 -27.73719 -26.56884 -25.21815 -21.27536 -20.27177 -19.72870 -18.00233 -16.83484 -16.57466 -16.23284 -15.85421 -15.52388 -15.03858 -14.16160 -13.59024 -13.34737 -12.98397 -12.59623 -12.45377 -12.25613 -12.08140 -11.87516 -11.54005 -11.17618 -10.29401 -10.03287 -9.57321 -8.48380 -5.97690 1.35485 1.40455 1.55312 2.02599 2.29547 3.16941 3.19641 3.60917 3.73989 3.84746 3.94628 4.10825 4.59384 4.61711 4.82663 4.92196 5.06152 5.26084 5.39268 5.46243 5.99278 6.36846 6.57978 6.70412 7.10513 7.55384 8.10996 8.69317 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.087626 B = 0.009165 C = 0.008766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.463878 B = 3054.388680 C = 3193.245493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.076 0.924 9 N -0.569 5.569 10 C 0.446 3.554 11 O -0.640 6.640 12 C -0.130 4.130 13 H 0.125 0.875 14 C -0.108 4.108 15 C 0.079 3.921 16 H 0.093 0.907 17 N -0.851 5.851 18 C -0.110 4.110 19 H 0.279 0.721 20 H 0.397 0.603 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.351 0.649 24 H 0.351 0.649 25 H 0.061 0.939 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -10.579 1.140 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.205 5.205 10 C 0.234 3.766 11 O -0.528 6.528 12 C -0.151 4.151 13 H 0.143 0.857 14 C -0.146 4.146 15 C -0.032 4.032 16 H 0.111 0.889 17 N -0.383 5.383 18 C -0.149 4.149 19 H 0.088 0.912 20 H 0.231 0.769 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.165 0.835 24 H 0.165 0.835 25 H 0.079 0.921 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.134 -9.723 1.341 10.045 hybrid contribution -0.493 0.254 -0.419 0.695 sum -2.627 -9.469 0.922 9.870 Atomic orbital electron populations 1.69682 1.06854 1.29317 1.50167 1.26069 0.96574 1.02445 0.96077 0.84855 0.77955 0.76933 0.78477 1.19903 1.19341 1.19424 1.19746 0.92684 0.84276 1.50157 0.90566 1.41980 1.09304 1.04742 1.64437 1.20833 0.87908 0.86237 0.81606 1.90457 1.16326 1.88222 1.57783 1.22534 1.00029 0.91385 1.01202 0.85725 1.22805 0.97860 0.94083 0.99851 1.22703 0.96019 0.92872 0.91597 0.88915 1.58679 1.25459 1.33504 1.20694 1.22916 1.01360 0.96290 0.94326 0.91198 0.76943 0.89877 0.91429 0.83474 0.83491 0.92053 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.65 13.05 21.66 0.28 -50.37 15 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 15 3 Si 0.99 43.87 29.55 68.60 2.03 45.90 15 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.34 -20.04 9.68 84.04 0.81 -19.23 15 8 H 0.08 4.82 7.16 -2.92 -0.02 4.80 15 9 N -0.57 -30.69 5.29 -306.99 -1.62 -32.32 15 10 C 0.45 22.59 7.31 87.66 0.64 23.23 15 11 O -0.64 -37.80 15.48 -3.05 -0.05 -37.85 15 12 C -0.13 -4.69 4.14 -11.02 -0.05 -4.73 15 13 H 0.12 3.81 8.14 -2.39 -0.02 3.79 15 14 C -0.11 -3.42 7.19 31.12 0.22 -3.20 15 15 C 0.08 1.96 4.96 45.50 0.23 2.19 15 16 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 17 N -0.85 -18.90 9.58 -166.23 -1.59 -20.49 15 18 C -0.11 -3.45 7.44 31.18 0.23 -3.22 15 19 H 0.28 14.23 8.31 -92.71 -0.77 13.46 15 20 H 0.40 20.27 7.90 -92.70 -0.73 19.54 15 21 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.07 2.63 7.45 -2.39 -0.02 2.61 15 23 H 0.35 6.07 9.08 -89.69 -0.81 5.25 15 24 H 0.35 6.52 9.07 -89.70 -0.81 5.71 15 25 H 0.06 2.30 8.09 -2.38 -0.02 2.28 15 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -69.72 230.12 0.46 -69.26 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -1.14 Total: 31.02 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 2.56 Total: -5.15 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -2.93 Total: -103.18 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.05 Total: -37.85 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.72 0.46 -69.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575494853.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.259 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds