Wall clock time and date at job start Mon Mar 30 2020 01:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47057 * 2 1 4 4 H 1.08005 * 120.00342 * 5.50964 * 3 2 1 5 5 C 1.37873 * 120.00332 * 185.50542 * 3 2 1 6 6 N 1.31519 * 120.00251 * 180.77519 * 5 3 2 7 7 Si 1.86802 * 119.99738 * 0.77702 * 5 3 2 8 8 H 1.48501 * 109.47054 * 84.81190 * 7 5 3 9 9 H 1.48503 * 109.47174 * 204.81052 * 7 5 3 10 10 H 1.48499 * 109.47312 * 324.81246 * 7 5 3 11 11 C 1.50705 * 109.47183 * 119.99912 * 2 1 3 12 12 O 1.20823 * 119.99735 * 240.00578 * 11 2 1 13 13 O 1.34229 * 119.99873 * 60.00162 * 11 2 1 14 14 C 1.52996 * 109.47180 * 240.00073 * 2 1 3 15 15 C 1.53004 * 117.51921 * 234.30640 * 14 2 1 16 16 C 1.53000 * 117.50160 * 302.93788 * 14 2 1 17 17 H 1.09001 * 109.47050 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.46950 * 300.00004 * 1 2 3 19 19 H 1.08997 * 109.46859 * 60.00319 * 1 2 3 20 20 H 0.97003 * 119.99569 * 180.02562 * 6 5 3 21 21 H 0.96690 * 116.99979 * 180.02562 * 13 11 2 22 22 H 1.09000 * 115.54894 * 88.60789 * 14 2 1 23 23 H 1.09000 * 117.49990 * 214.97630 * 15 14 2 24 24 H 1.09003 * 117.49656 * 359.97438 * 15 14 2 25 25 H 1.08995 * 117.49470 * 359.97422 * 16 14 2 26 26 H 1.08996 * 117.50272 * 144.99676 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3346 2.2403 0.0898 5 6 3.3827 1.6747 -0.1146 6 7 3.8224 2.9141 -0.0992 7 14 4.5875 0.2582 -0.2916 8 1 4.6812 -0.1363 -1.7202 9 1 5.9254 0.6827 0.1935 10 1 4.1139 -0.8979 0.5111 11 6 2.0324 -0.7104 1.2305 12 8 2.7269 -0.1231 2.0258 13 8 1.7081 -1.9955 1.4429 14 6 2.0400 -0.7212 -1.2492 15 6 3.0221 -1.8769 -1.0469 16 6 1.5798 -2.1636 -1.4696 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 4.7724 3.0926 -0.1802 21 1 2.0535 -2.4084 2.2461 22 1 2.1742 -0.0954 -2.1315 23 1 3.8024 -2.0113 -1.7960 24 1 3.3054 -2.1233 -0.0236 25 1 0.9141 -2.5988 -0.7244 26 1 1.4113 -2.4868 -2.4968 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575511210.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:46 Heat of formation + Delta-G solvation = -47.272132 kcal Electronic energy + Delta-G solvation = -12079.948253 eV Core-core repulsion = 9932.534846 eV Total energy + Delta-G solvation = -2147.413407 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.92729 -36.76982 -35.18746 -32.86972 -31.10525 -25.78832 -23.40213 -22.09073 -21.59047 -18.90256 -17.15346 -16.88191 -15.69956 -14.99941 -14.47815 -13.57744 -13.18160 -12.72988 -12.47283 -11.95804 -11.50721 -11.18892 -10.93125 -10.70462 -10.41831 -10.13701 -9.79565 -9.70495 -9.19016 -9.01582 -8.64866 -8.52621 -6.12148 -4.20294 3.21837 3.35641 3.46591 3.55365 4.06560 4.40357 4.56953 5.25049 5.55500 5.60664 5.70687 6.05186 6.16809 6.23019 6.32861 6.42126 6.49882 6.73040 6.90040 6.97453 7.10751 7.43366 7.56811 8.35841 8.85781 9.04025 9.49105 10.96932 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.024540 C = 0.022712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.798739 B = 1140.739304 C = 1232.541292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.084 3.916 3 C -0.508 4.508 4 H 0.084 0.916 5 C 0.093 3.907 6 N -0.886 5.886 7 Si 0.895 3.105 8 H -0.285 1.285 9 H -0.305 1.305 10 H -0.253 1.253 11 C 0.467 3.533 12 O -0.503 6.503 13 O -0.533 6.533 14 C -0.132 4.132 15 C -0.215 4.215 16 C -0.178 4.178 17 H 0.046 0.954 18 H 0.048 0.952 19 H 0.063 0.937 20 H 0.266 0.734 21 H 0.381 0.619 22 H 0.114 0.886 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 -9.921 -1.330 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 C -0.544 4.544 4 H 0.102 0.898 5 C -0.112 4.112 6 N -0.521 5.521 7 Si 0.727 3.273 8 H -0.212 1.212 9 H -0.233 1.233 10 H -0.178 1.178 11 C 0.309 3.691 12 O -0.388 6.388 13 O -0.345 6.345 14 C -0.150 4.150 15 C -0.252 4.252 16 C -0.215 4.215 17 H 0.065 0.935 18 H 0.068 0.932 19 H 0.082 0.918 20 H 0.076 0.924 21 H 0.237 0.763 22 H 0.132 0.868 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.490 -9.401 -1.475 10.136 hybrid contribution 1.211 -0.858 0.504 1.568 sum -2.279 -10.259 -0.971 10.554 Atomic orbital electron populations 1.21607 0.93909 1.00189 1.01835 1.18201 0.94614 0.94419 0.84555 1.20565 0.93513 0.88093 1.52220 0.89810 1.25027 0.98420 0.95641 0.92150 1.69895 1.15036 1.19221 1.47948 0.87099 0.79553 0.82915 0.77772 1.21196 1.23324 1.17820 1.25381 0.76635 0.77890 0.89185 1.90570 1.35022 1.66546 1.46685 1.84777 1.73322 1.29381 1.47010 1.22819 1.02062 0.89273 1.00851 1.23630 0.93321 1.05285 1.02926 1.23011 0.97297 0.99974 1.01200 0.93527 0.93239 0.91840 0.92430 0.76309 0.86796 0.89537 0.87645 0.88164 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.15 37.16 0.30 -2.00 15 2 C 0.08 1.95 0.56 -156.81 -0.09 1.86 15 3 C -0.51 -14.28 8.12 -34.44 -0.28 -14.56 15 4 H 0.08 2.51 7.99 -52.48 -0.42 2.10 15 5 C 0.09 2.74 5.11 -17.82 -0.09 2.64 15 6 N -0.89 -27.56 13.96 55.43 0.77 -26.79 15 7 Si 0.89 23.16 21.23 -169.99 -3.61 19.55 15 8 H -0.28 -6.96 6.40 56.52 0.36 -6.60 15 9 H -0.30 -8.19 7.11 56.52 0.40 -7.79 15 10 H -0.25 -6.21 2.98 56.52 0.17 -6.04 15 11 C 0.47 10.74 4.00 36.01 0.14 10.89 15 12 O -0.50 -13.38 14.28 -18.75 -0.27 -13.65 15 13 O -0.53 -9.68 10.24 -39.26 -0.40 -10.09 15 14 C -0.13 -2.77 3.27 -90.62 -0.30 -3.06 15 15 C -0.22 -4.24 5.96 -26.73 -0.16 -4.40 15 16 C -0.18 -3.05 9.25 -26.73 -0.25 -3.30 15 17 H 0.05 0.79 7.08 -51.93 -0.37 0.42 15 18 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 19 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 20 H 0.27 7.83 8.31 -40.82 -0.34 7.49 15 21 H 0.38 5.29 9.10 45.56 0.41 5.71 15 22 H 0.11 2.47 8.03 -51.93 -0.42 2.05 15 23 H 0.09 1.64 7.31 -51.93 -0.38 1.26 15 24 H 0.11 2.17 4.19 -51.93 -0.22 1.95 15 25 H 0.10 1.66 6.37 -51.93 -0.33 1.33 15 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 LS Contribution 203.42 15.07 3.07 3.07 Total: -1.00 -32.34 203.42 -3.55 -35.89 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -2.39 Total: 3.95 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.71 Total: -11.93 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.67 Total: -23.74 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -3.61 Total: 19.55 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -32.34 -3.55 -35.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575511210.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.383 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds