Wall clock time and date at job start Mon Mar 30 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.43251 * 32.45323 * 11 10 9 13 13 C 1.54621 * 110.48628 * 154.99791 * 11 10 9 14 14 C 1.54482 * 101.76339 * 93.88412 * 13 11 10 15 15 N 1.46758 * 105.47441 * 25.41405 * 14 13 11 16 16 C 1.34417 * 111.30261 * 342.98272 * 15 14 13 17 17 O 1.21277 * 124.94443 * 180.45366 * 16 15 14 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 20 20 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 21 21 H 1.00899 * 110.99966 * 56.04679 * 10 9 7 22 22 H 1.08998 * 110.97109 * 211.99646 * 13 11 10 23 23 H 1.09001 * 110.97258 * 335.72737 * 13 11 10 24 24 H 1.09002 * 110.24523 * 144.41831 * 14 13 11 25 25 H 1.09001 * 110.24379 * 266.41222 * 14 13 11 26 26 H 0.97000 * 124.34737 * 162.98763 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 5.4695 -2.6185 -0.0001 12 1 5.8730 -1.7671 0.5480 13 6 5.9754 -3.9453 0.6119 14 6 6.1581 -4.8230 -0.6461 15 7 6.3817 -3.8827 -1.7505 16 6 5.9986 -2.6381 -1.4173 17 8 6.0664 -1.6717 -2.1469 18 1 -0.4850 0.8401 0.0004 19 1 3.8751 -0.6798 -0.8895 20 1 3.8745 -0.6809 0.8904 21 1 3.6258 -3.0953 -0.7817 22 1 6.9247 -3.8001 1.1274 23 1 5.2311 -4.3742 1.2828 24 1 7.0216 -5.4775 -0.5272 25 1 5.2595 -5.4124 -0.8285 26 1 6.7575 -4.1279 -2.6104 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575524242.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:09 Heat of formation + Delta-G solvation = -63.757963 kcal Electronic energy + Delta-G solvation = -11162.771323 eV Core-core repulsion = 9046.935788 eV Total energy + Delta-G solvation = -2115.835535 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.42487 -37.62847 -36.42412 -34.44737 -31.48633 -29.19726 -26.97208 -23.38096 -22.60834 -21.48930 -19.02685 -18.41502 -17.19749 -17.05791 -16.23399 -15.30546 -15.07064 -14.82721 -14.51088 -14.38545 -13.97831 -13.44544 -12.85815 -12.67574 -12.19860 -12.09380 -11.82772 -11.50688 -11.36560 -10.83800 -10.08865 -9.29401 -8.34568 -6.38733 1.30630 1.33741 1.42446 1.46321 2.30874 2.41539 2.99625 3.27224 3.48783 3.76983 4.14215 4.30217 4.60186 4.72244 4.82991 5.00645 5.17795 5.23347 5.44689 5.79844 5.84010 5.98267 6.33154 6.46703 6.67819 7.19940 7.26099 8.81650 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.061524 B = 0.010959 C = 0.010167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.000796 B = 2554.406927 C = 2753.227652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.943 3.057 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.046 0.954 9 C 0.170 3.830 10 N -0.644 5.644 11 C 0.041 3.959 12 H 0.097 0.903 13 C -0.114 4.114 14 C 0.100 3.900 15 N -0.716 5.716 16 C 0.478 3.522 17 O -0.590 6.590 18 H 0.269 0.731 19 H -0.022 1.022 20 H 0.032 0.968 21 H 0.336 0.664 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.828 -9.750 0.913 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.064 0.936 9 C 0.041 3.959 10 N -0.275 5.275 11 C -0.072 4.072 12 H 0.115 0.885 13 C -0.152 4.152 14 C -0.023 4.023 15 N -0.371 5.371 16 C 0.263 3.737 17 O -0.469 6.469 18 H 0.078 0.922 19 H -0.005 1.005 20 H 0.050 0.950 21 H 0.154 0.846 22 H 0.126 0.874 23 H 0.126 0.874 24 H 0.137 0.863 25 H 0.099 0.901 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 14.610 -9.202 1.353 17.319 hybrid contribution 0.105 1.099 -1.529 1.886 sum 14.715 -8.103 -0.176 16.799 Atomic orbital electron populations 1.70025 1.07854 1.28272 1.52036 1.25761 0.95612 1.02935 0.94072 0.85775 0.78967 0.79033 0.79600 1.18043 1.19005 1.20299 1.21275 0.90904 0.93788 1.50785 0.93597 1.19867 0.94168 0.87036 0.94813 1.60803 1.03632 1.14710 1.48321 1.22675 0.89688 1.02730 0.92144 0.88454 1.22729 1.03407 0.91646 0.97411 1.22397 1.03995 0.91587 0.84336 1.46252 1.63308 1.08907 1.18641 1.22396 0.76408 0.83208 0.91712 1.90704 1.57156 1.39670 1.59399 0.92184 1.00463 0.95038 0.84650 0.87351 0.87432 0.86324 0.90071 0.74536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.96 21.45 0.30 -59.51 15 2 C 0.01 0.87 5.47 84.66 0.46 1.34 15 3 Si 0.94 46.48 27.47 68.60 1.88 48.37 15 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.27 -13.12 6.54 99.48 0.65 -12.47 15 6 H -0.28 -13.25 7.11 99.48 0.71 -12.55 15 7 C -0.53 -31.62 9.87 25.60 0.25 -31.37 15 8 H 0.05 2.97 8.06 -2.91 -0.02 2.94 15 9 C 0.17 8.61 4.36 85.56 0.37 8.99 15 10 N -0.64 -26.23 6.30 -495.61 -3.12 -29.35 15 11 C 0.04 1.32 3.26 44.91 0.15 1.47 15 12 H 0.10 3.23 7.82 -2.39 -0.02 3.22 15 13 C -0.11 -2.20 6.89 31.65 0.22 -1.98 15 14 C 0.10 1.53 7.78 86.83 0.68 2.21 15 15 N -0.72 -16.28 6.24 -459.81 -2.87 -19.15 15 16 C 0.48 16.41 7.76 87.90 0.68 17.09 15 17 O -0.59 -26.69 18.00 -3.02 -0.05 -26.74 15 18 H 0.27 15.87 8.31 -92.70 -0.77 15.10 15 19 H -0.02 -1.23 7.17 -2.39 -0.02 -1.25 15 20 H 0.03 1.56 7.50 -2.39 -0.02 1.54 15 21 H 0.34 13.76 8.43 -89.70 -0.76 13.01 15 22 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.11 2.06 8.08 -2.39 -0.02 2.04 15 24 H 0.12 0.94 8.14 -2.39 -0.02 0.92 15 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 26 H 0.42 7.83 8.96 -92.71 -0.83 6.99 15 Total: -1.00 -76.04 226.87 -1.50 -77.54 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.45 Total: 11.11 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 2.81 Total: -2.26 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -5.69 Total: -108.01 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.37 kcal Total: -76.04 -1.50 -77.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575524242.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.780 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds