Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.56054 * 2 1 4 4 C 1.54479 * 110.51003 * 122.67848 * 2 1 3 5 5 O 1.44424 * 104.80054 * 94.67083 * 4 2 1 6 6 C 1.44424 * 105.27966 * 40.50586 * 5 4 2 7 7 C 1.54476 * 104.80139 * 319.48952 * 6 5 4 8 8 H 1.09000 * 110.51101 * 265.18741 * 7 6 5 9 9 C 1.50704 * 110.51016 * 142.62231 * 7 6 5 10 10 O 1.21440 * 119.99880 * 271.45265 * 9 7 6 11 11 C 1.41024 * 120.00110 * 91.45262 * 9 7 6 12 12 H 1.07993 * 120.00180 * 6.41259 * 11 9 7 13 13 C 1.40463 * 119.99828 * 186.41241 * 11 9 7 14 14 N 1.30521 * 119.99846 * 184.73579 * 13 11 9 15 15 Si 1.86801 * 120.00213 * 4.45721 * 13 11 9 16 16 H 1.48493 * 109.46991 * 180.27924 * 15 13 11 17 17 H 1.48505 * 109.46971 * 300.27833 * 15 13 11 18 18 H 1.48503 * 109.46974 * 60.27718 * 15 13 11 19 19 H 1.09010 * 109.46823 * 182.67845 * 1 2 3 20 20 H 1.08994 * 109.47211 * 302.67312 * 1 2 3 21 21 H 1.09001 * 109.47504 * 62.68147 * 1 2 3 22 22 H 1.08993 * 110.37326 * 335.83415 * 4 2 1 23 23 H 1.08998 * 110.46512 * 213.54142 * 4 2 1 24 24 H 1.08994 * 110.37385 * 200.65540 * 6 5 4 25 25 H 1.09001 * 110.37074 * 78.32238 * 6 5 4 26 26 H 0.97004 * 120.00079 * 354.62616 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7812 1.2178 5 8 2.3071 -2.1177 0.7238 6 6 2.8757 -1.9421 -0.5922 7 6 2.0713 -0.7813 -1.2181 8 1 1.2505 -1.1677 -1.8223 9 6 2.9707 0.0956 -2.0507 10 8 3.5552 1.0277 -1.5366 11 6 3.1336 -0.1662 -3.4268 12 1 2.5366 -0.9280 -3.9059 13 6 4.0723 0.5640 -4.1743 14 7 4.1587 0.3873 -5.4646 15 14 5.1916 1.7934 -3.3229 16 1 6.0796 2.4324 -4.3271 17 1 4.3679 2.8343 -2.6570 18 1 6.0171 1.0910 -2.3078 19 1 -0.3633 -1.0267 0.0480 20 1 -0.3633 0.5547 0.8650 21 1 -0.3634 0.4716 -0.9130 22 1 1.3311 -0.7974 2.0177 23 1 3.0020 -0.3380 1.5719 24 1 2.7535 -2.8502 -1.1825 25 1 3.9302 -1.6762 -0.5174 26 1 3.6306 -0.3025 -5.8962 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575578697.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = -138.366329 kcal Electronic energy + Delta-G solvation = -11490.703646 eV Core-core repulsion = 9339.340098 eV Total energy + Delta-G solvation = -2151.363548 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.01128 -38.78031 -35.32420 -34.23968 -31.44594 -28.67082 -27.27270 -24.38555 -22.22631 -20.67405 -19.64437 -17.42588 -17.18644 -16.34121 -16.12548 -15.74573 -15.28975 -14.63740 -14.33831 -14.01717 -13.38527 -13.23767 -12.99240 -12.46709 -12.34211 -11.81176 -11.79535 -11.60341 -11.42809 -11.30353 -10.74424 -9.93892 -9.14406 -7.45984 1.20578 1.50881 1.90138 1.95991 2.34936 2.95822 3.05545 3.65893 3.85018 4.00928 4.22661 4.24694 4.49874 4.58296 4.72804 4.78191 4.82107 4.95898 5.01371 5.19274 5.33509 5.35494 5.62880 5.77453 6.17123 6.42461 7.71229 7.87459 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.057451 B = 0.013496 C = 0.013176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.258289 B = 2074.116555 C = 2124.513492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 H 0.074 0.926 4 C 0.052 3.948 5 O -0.386 6.386 6 C 0.070 3.930 7 C -0.148 4.148 8 H 0.089 0.911 9 C 0.356 3.644 10 O -0.604 6.604 11 C -0.596 4.596 12 H 0.068 0.932 13 C 0.025 3.975 14 N -0.814 5.814 15 Si 1.162 2.838 16 H -0.307 1.307 17 H -0.293 1.293 18 H -0.291 1.291 19 H 0.063 0.937 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.119 0.881 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.045 0.955 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 -2.411 8.453 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 H 0.093 0.907 4 C -0.024 4.024 5 O -0.305 6.305 6 C -0.007 4.007 7 C -0.168 4.168 8 H 0.107 0.893 9 C 0.261 3.739 10 O -0.505 6.505 11 C -0.626 4.626 12 H 0.086 0.914 13 C -0.194 4.194 14 N -0.440 5.440 15 Si 0.993 3.007 16 H -0.238 1.238 17 H -0.221 1.221 18 H -0.218 1.218 19 H 0.082 0.918 20 H 0.096 0.904 21 H 0.067 0.933 22 H 0.137 0.863 23 H 0.072 0.928 24 H 0.123 0.877 25 H 0.063 0.937 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.413 -1.193 8.469 9.209 hybrid contribution -1.258 -1.249 -0.469 1.834 sum -4.671 -2.442 8.000 9.580 Atomic orbital electron populations 1.21751 0.92364 1.02418 1.02288 1.22498 0.97895 1.00214 0.93458 0.90715 1.23582 1.00532 0.81770 0.96517 1.89006 1.83193 1.27312 1.30987 1.23148 0.95969 0.98037 0.83550 1.22842 0.99194 0.97075 0.97664 0.89284 1.19933 0.81338 0.83555 0.89115 1.89862 1.52018 1.33970 1.74670 1.22162 1.21842 1.21306 0.97334 0.91395 1.28312 0.97245 0.99287 0.94577 1.70558 1.36080 1.27114 1.10267 0.81881 0.73137 0.74530 0.71164 1.23837 1.22130 1.21822 0.91767 0.90380 0.93300 0.86281 0.92835 0.87653 0.93676 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.95 71.98 0.64 -3.04 15 2 C -0.12 -4.33 3.23 -9.78 -0.03 -4.36 15 3 H 0.07 3.02 6.84 -2.39 -0.02 3.00 15 4 C 0.05 1.64 7.18 72.48 0.52 2.16 15 5 O -0.39 -13.58 11.65 -148.98 -1.74 -15.31 15 6 C 0.07 2.64 7.17 72.48 0.52 3.16 15 7 C -0.15 -6.11 3.04 -10.52 -0.03 -6.14 15 8 H 0.09 3.52 7.72 -2.39 -0.02 3.50 15 9 C 0.36 18.36 5.76 26.37 0.15 18.51 15 10 O -0.60 -33.52 11.20 -3.53 -0.04 -33.56 15 11 C -0.60 -32.73 9.65 23.50 0.23 -32.51 15 12 H 0.07 3.70 8.06 -2.91 -0.02 3.67 15 13 C 0.02 1.38 5.53 85.43 0.47 1.85 15 14 N -0.81 -44.98 13.64 21.91 0.30 -44.68 15 15 Si 1.16 58.75 25.97 68.60 1.78 60.54 15 16 H -0.31 -14.59 7.11 99.48 0.71 -13.88 15 17 H -0.29 -15.39 6.77 99.48 0.67 -14.72 15 18 H -0.29 -14.68 7.11 99.48 0.71 -13.97 15 19 H 0.06 1.68 8.14 -2.38 -0.02 1.66 15 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.12 2.89 7.87 -2.39 -0.02 2.87 15 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.11 3.56 8.14 -2.39 -0.02 3.54 15 25 H 0.04 1.83 7.86 -2.39 -0.02 1.81 15 26 H 0.28 15.08 8.72 -92.71 -0.81 14.27 15 Total: -1.00 -60.62 221.73 3.86 -56.76 By element: Atomic # 1 Polarization: -4.47 SS G_CDS: 1.09 Total: -3.38 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 2.47 Total: -20.37 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.30 Total: -44.68 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -1.78 Total: -48.87 kcal Atomic # 14 Polarization: 58.75 SS G_CDS: 1.78 Total: 60.54 kcal Total: -60.62 3.86 -56.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575578697.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.606 kcal (2) G-P(sol) polarization free energy of solvation -60.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds