Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.56322 * 2 1 4 4 C 1.54481 * 110.51015 * 122.67729 * 2 1 3 5 5 O 1.44424 * 104.80173 * 142.62327 * 4 2 1 6 6 C 1.44429 * 105.27553 * 319.48971 * 5 4 2 7 7 C 1.54482 * 104.80428 * 40.50879 * 6 5 4 8 8 H 1.08998 * 110.50437 * 94.80332 * 7 6 5 9 9 C 1.50698 * 110.51447 * 217.37681 * 7 6 5 10 10 O 1.21437 * 119.99508 * 27.81954 * 9 7 6 11 11 C 1.41018 * 120.00316 * 207.81747 * 9 7 6 12 12 H 1.08007 * 119.99503 * 7.41320 * 11 9 7 13 13 C 1.40457 * 120.00538 * 187.41709 * 11 9 7 14 14 N 1.30524 * 119.99802 * 7.45175 * 13 11 9 15 15 Si 1.86797 * 120.00273 * 187.45385 * 13 11 9 16 16 H 1.48497 * 109.46938 * 265.01360 * 15 13 11 17 17 H 1.48492 * 109.47317 * 25.01362 * 15 13 11 18 18 H 1.48501 * 109.47253 * 145.01468 * 15 13 11 19 19 H 1.08997 * 109.47648 * 184.17945 * 1 2 3 20 20 H 1.09005 * 109.46948 * 304.17337 * 1 2 3 21 21 H 1.09001 * 109.47062 * 64.17213 * 1 2 3 22 22 H 1.09002 * 110.37051 * 23.79394 * 4 2 1 23 23 H 1.08997 * 110.46646 * 261.50137 * 4 2 1 24 24 H 1.09005 * 110.37116 * 281.67823 * 6 5 4 25 25 H 1.08994 * 110.46941 * 159.39521 * 6 5 4 26 26 H 0.97001 * 120.00096 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7812 1.2179 5 8 3.2398 -1.4713 0.7239 6 6 2.8757 -1.9422 -0.5921 7 6 2.0713 -0.7814 -1.2181 8 1 2.7214 -0.1485 -1.8222 9 6 0.9344 -1.3154 -2.0506 10 8 0.4381 -2.3907 -1.7821 11 6 0.4468 -0.5665 -3.1415 12 1 0.9621 0.3296 -3.4547 13 6 -0.7090 -0.9857 -3.8207 14 7 -1.4136 -1.9816 -3.3566 15 14 -1.2377 -0.1180 -5.3882 16 1 -2.2386 0.9289 -5.0609 17 1 -0.0549 0.5109 -6.0289 18 1 -1.8399 -1.1043 -6.3209 19 1 -0.3634 -1.0249 0.0749 20 1 -0.3633 0.5773 0.8503 21 1 -0.3633 0.4477 -0.9250 22 1 1.3285 -1.4969 1.5702 23 1 2.3462 -0.0953 2.0191 24 1 2.2563 -2.8360 -0.5173 25 1 3.7677 -2.1481 -1.1836 26 1 -2.2116 -2.2714 -3.8258 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575578698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = -100.246728 kcal Electronic energy + Delta-G solvation = -11601.961465 eV Core-core repulsion = 9452.250908 eV Total energy + Delta-G solvation = -2149.710558 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.15786 -36.27618 -32.79683 -32.46356 -29.12036 -26.86669 -25.46868 -22.53620 -20.77794 -18.39739 -16.40578 -15.80456 -15.33360 -14.54681 -14.49784 -13.56296 -13.07435 -12.61663 -12.49562 -11.71981 -11.41589 -11.32161 -10.91814 -10.70937 -10.47388 -10.29709 -10.12945 -9.88038 -9.75197 -9.10467 -8.92844 -7.37935 -6.30815 -4.89771 3.02009 3.12404 3.16448 4.00947 4.16896 4.64861 5.20792 5.44188 5.54707 5.85942 5.91040 6.06789 6.13456 6.28375 6.41103 6.52798 6.63067 6.77713 6.85375 6.97348 7.23365 7.24900 7.45929 8.07889 8.80607 8.86733 10.31130 10.53657 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.069449 B = 0.012681 C = 0.012377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.074975 B = 2207.478893 C = 2261.760897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.070 0.930 4 C 0.051 3.949 5 O -0.391 6.391 6 C 0.053 3.947 7 C -0.162 4.162 8 H 0.075 0.925 9 C 0.384 3.616 10 O -0.545 6.545 11 C -0.535 4.535 12 H 0.068 0.932 13 C 0.086 3.914 14 N -0.741 5.741 15 Si 0.901 3.099 16 H -0.271 1.271 17 H -0.262 1.262 18 H -0.276 1.276 19 H 0.067 0.933 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 4.205 2.619 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.089 0.911 4 C -0.026 4.026 5 O -0.310 6.310 6 C -0.023 4.023 7 C -0.182 4.182 8 H 0.093 0.907 9 C 0.279 3.721 10 O -0.435 6.435 11 C -0.566 4.566 12 H 0.086 0.914 13 C -0.137 4.137 14 N -0.369 5.369 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.185 1.185 18 H -0.202 1.202 19 H 0.086 0.914 20 H 0.055 0.945 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.277 3.522 2.883 5.090 hybrid contribution -0.367 0.705 -0.961 1.247 sum 1.910 4.228 1.922 5.022 Atomic orbital electron populations 1.21864 0.93690 1.02978 1.01595 1.22239 0.97249 0.98673 0.93869 0.91145 1.23478 0.87905 0.94813 0.96396 1.88960 1.35604 1.74199 1.32247 1.23422 0.98518 0.97914 0.82419 1.23156 1.00312 0.97072 0.97643 0.90702 1.19108 0.82282 0.86721 0.84035 1.90382 1.58964 1.23177 1.70932 1.20776 1.10113 1.10962 1.14762 0.91363 1.25975 0.95756 0.94039 0.97968 1.69902 1.11237 1.20275 1.35519 0.86444 0.79488 0.79792 0.81722 1.19587 1.18540 1.20158 0.91447 0.94459 0.90573 0.92525 0.90261 0.90726 0.90400 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.99 37.16 0.30 -2.68 15 2 C -0.10 -2.01 3.72 -89.05 -0.33 -2.34 15 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 4 C 0.05 0.94 7.18 37.93 0.27 1.21 15 5 O -0.39 -8.00 11.65 -35.23 -0.41 -8.41 15 6 C 0.05 1.14 7.13 37.94 0.27 1.41 15 7 C -0.16 -3.64 3.40 -90.20 -0.31 -3.94 15 8 H 0.07 1.59 8.12 -51.93 -0.42 1.17 15 9 C 0.38 10.35 4.07 -33.26 -0.14 10.21 15 10 O -0.55 -16.56 13.64 5.42 0.07 -16.49 15 11 C -0.53 -14.42 8.30 -37.69 -0.31 -14.73 15 12 H 0.07 1.73 7.86 -52.48 -0.41 1.31 15 13 C 0.09 2.27 5.48 -17.27 -0.09 2.18 15 14 N -0.74 -20.87 11.82 55.57 0.66 -20.22 15 15 Si 0.90 19.18 29.57 -169.99 -5.03 14.16 15 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 19 H 0.07 1.58 7.06 -51.93 -0.37 1.22 15 20 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.08 1.72 6.79 -51.93 -0.35 1.37 15 22 H 0.06 1.06 7.80 -51.93 -0.41 0.65 15 23 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 24 H 0.07 1.75 6.88 -51.93 -0.36 1.39 15 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.27 6.95 8.29 -40.82 -0.34 6.61 15 LS Contribution 220.64 15.07 3.33 3.33 Total: -1.00 -30.44 220.64 -4.86 -35.30 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.14 Total: 1.01 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.34 Total: -8.68 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.66 Total: -20.22 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.34 Total: -24.90 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.44 -4.86 -35.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575578698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.947 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds