Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.56322 * 2 1 4 4 C 1.54481 * 110.51015 * 122.67729 * 2 1 3 5 5 O 1.44424 * 104.80173 * 142.62327 * 4 2 1 6 6 C 1.44429 * 105.27553 * 319.48971 * 5 4 2 7 7 C 1.54482 * 104.80428 * 40.50879 * 6 5 4 8 8 H 1.08998 * 110.50437 * 94.80332 * 7 6 5 9 9 C 1.50698 * 110.51447 * 217.37681 * 7 6 5 10 10 O 1.21437 * 119.99508 * 27.81954 * 9 7 6 11 11 C 1.41018 * 120.00316 * 207.81747 * 9 7 6 12 12 H 1.08007 * 119.99503 * 7.41320 * 11 9 7 13 13 C 1.40457 * 120.00538 * 187.41709 * 11 9 7 14 14 N 1.30524 * 119.99802 * 7.45175 * 13 11 9 15 15 Si 1.86797 * 120.00273 * 187.45385 * 13 11 9 16 16 H 1.48497 * 109.46938 * 265.01360 * 15 13 11 17 17 H 1.48492 * 109.47317 * 25.01362 * 15 13 11 18 18 H 1.48501 * 109.47253 * 145.01468 * 15 13 11 19 19 H 1.08997 * 109.47648 * 184.17945 * 1 2 3 20 20 H 1.09005 * 109.46948 * 304.17337 * 1 2 3 21 21 H 1.09001 * 109.47062 * 64.17213 * 1 2 3 22 22 H 1.09002 * 110.37051 * 23.79394 * 4 2 1 23 23 H 1.08997 * 110.46646 * 261.50137 * 4 2 1 24 24 H 1.09005 * 110.37116 * 281.67823 * 6 5 4 25 25 H 1.08994 * 110.46941 * 159.39521 * 6 5 4 26 26 H 0.97001 * 120.00096 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7812 1.2179 5 8 3.2398 -1.4713 0.7239 6 6 2.8757 -1.9422 -0.5921 7 6 2.0713 -0.7814 -1.2181 8 1 2.7214 -0.1485 -1.8222 9 6 0.9344 -1.3154 -2.0506 10 8 0.4381 -2.3907 -1.7821 11 6 0.4468 -0.5665 -3.1415 12 1 0.9621 0.3296 -3.4547 13 6 -0.7090 -0.9857 -3.8207 14 7 -1.4136 -1.9816 -3.3566 15 14 -1.2377 -0.1180 -5.3882 16 1 -2.2386 0.9289 -5.0609 17 1 -0.0549 0.5109 -6.0289 18 1 -1.8399 -1.1043 -6.3209 19 1 -0.3634 -1.0249 0.0749 20 1 -0.3633 0.5773 0.8503 21 1 -0.3633 0.4477 -0.9250 22 1 1.3285 -1.4969 1.5702 23 1 2.3462 -0.0953 2.0191 24 1 2.2563 -2.8360 -0.5173 25 1 3.7677 -2.1481 -1.1836 26 1 -2.2116 -2.2714 -3.8258 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575578698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = -121.121207 kcal Electronic energy + Delta-G solvation = -11602.866651 eV Core-core repulsion = 9452.250908 eV Total energy + Delta-G solvation = -2150.615743 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.87781 -38.24658 -34.77562 -34.25293 -30.88411 -28.89508 -27.07076 -24.35322 -22.50357 -20.24716 -18.37857 -17.49669 -17.18163 -16.25807 -16.17885 -15.31813 -14.85986 -14.51532 -14.25344 -13.50020 -13.16152 -13.06301 -12.68892 -12.57250 -12.29416 -12.01730 -11.85789 -11.54474 -11.44944 -10.92994 -10.75165 -9.46396 -8.31845 -7.03032 1.33796 1.38512 1.53940 2.18132 2.22342 3.06058 3.33342 3.84190 3.90574 4.14268 4.22786 4.44024 4.61946 4.69522 4.74222 4.85862 4.89182 5.06535 5.16422 5.22235 5.29084 5.53044 5.82443 6.01126 6.75571 6.83827 8.29840 8.52568 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.069449 B = 0.012681 C = 0.012377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.074975 B = 2207.478893 C = 2261.760897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.102 0.898 4 C 0.050 3.950 5 O -0.392 6.392 6 C 0.059 3.941 7 C -0.165 4.165 8 H 0.088 0.912 9 C 0.370 3.630 10 O -0.592 6.592 11 C -0.560 4.560 12 H 0.081 0.919 13 C 0.033 3.967 14 N -0.788 5.788 15 Si 0.985 3.015 16 H -0.258 1.258 17 H -0.251 1.251 18 H -0.271 1.271 19 H 0.027 0.973 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.122 0.878 24 H 0.044 0.956 25 H 0.097 0.903 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 6.166 2.422 7.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 H 0.120 0.880 4 C -0.026 4.026 5 O -0.311 6.311 6 C -0.018 4.018 7 C -0.185 4.185 8 H 0.107 0.893 9 C 0.268 3.732 10 O -0.485 6.485 11 C -0.591 4.591 12 H 0.100 0.900 13 C -0.186 4.186 14 N -0.417 5.417 15 Si 0.804 3.196 16 H -0.182 1.182 17 H -0.174 1.174 18 H -0.196 1.196 19 H 0.046 0.954 20 H 0.093 0.907 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.140 0.860 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.884 5.500 2.701 6.772 hybrid contribution -0.557 0.083 -0.853 1.022 sum 2.327 5.583 1.847 6.325 Atomic orbital electron populations 1.21718 0.94716 1.00800 1.01919 1.22323 0.96310 1.00124 0.93089 0.88016 1.23641 0.87199 0.95001 0.96745 1.88959 1.36251 1.74323 1.31552 1.23280 0.98700 0.96457 0.83328 1.23093 0.99086 0.97907 0.98439 0.89324 1.19671 0.83084 0.86044 0.84384 1.90350 1.60920 1.25082 1.72145 1.21234 1.10860 1.11586 1.15403 0.90044 1.27102 0.95360 0.94497 1.01689 1.70029 1.12019 1.22123 1.37516 0.85190 0.79411 0.78569 0.76422 1.18246 1.17430 1.19598 0.95373 0.90667 0.93039 0.93522 0.86007 0.93732 0.88441 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 7.99 71.98 0.58 -4.91 15 2 C -0.10 -3.74 3.72 -9.78 -0.04 -3.78 15 3 H 0.10 3.22 8.14 -2.39 -0.02 3.20 15 4 C 0.05 1.74 7.18 72.49 0.52 2.26 15 5 O -0.39 -15.25 11.65 -148.98 -1.74 -16.99 15 6 C 0.06 2.49 7.13 72.49 0.52 3.01 15 7 C -0.17 -7.31 3.40 -10.52 -0.04 -7.35 15 8 H 0.09 3.62 8.12 -2.39 -0.02 3.60 15 9 C 0.37 20.35 4.07 26.37 0.11 20.46 15 10 O -0.59 -37.47 13.64 -3.52 -0.05 -37.52 15 11 C -0.56 -30.36 8.30 23.49 0.20 -30.16 15 12 H 0.08 4.05 7.86 -2.91 -0.02 4.03 15 13 C 0.03 1.75 5.48 85.43 0.47 2.22 15 14 N -0.79 -45.50 11.82 21.91 0.26 -45.24 15 15 Si 0.98 38.93 29.57 68.60 2.03 40.96 15 16 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 17 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 18 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 19 H 0.03 1.34 7.06 -2.39 -0.02 1.32 15 20 H 0.07 2.43 8.14 -2.38 -0.02 2.41 15 21 H 0.05 2.33 6.79 -2.39 -0.02 2.31 15 22 H 0.05 1.70 7.80 -2.39 -0.02 1.68 15 23 H 0.12 3.19 8.14 -2.39 -0.02 3.17 15 24 H 0.04 2.16 6.88 -2.38 -0.02 2.14 15 25 H 0.10 3.67 8.14 -2.39 -0.02 3.65 15 26 H 0.28 14.58 8.29 -92.71 -0.77 13.82 15 Total: -1.00 -67.03 220.64 3.98 -63.05 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.16 Total: 13.99 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 2.31 Total: -18.26 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.26 Total: -45.24 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.78 Total: -54.51 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.03 3.98 -63.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575578698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.073 kcal (2) G-P(sol) polarization free energy of solvation -67.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds