Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.46088 * 2 1 4 4 C 1.54482 * 110.51268 * 237.24541 * 2 1 3 5 5 O 1.44425 * 104.80467 * 265.33555 * 4 2 1 6 6 C 1.44431 * 105.27461 * 319.48764 * 5 4 2 7 7 C 1.54476 * 104.80328 * 40.51271 * 6 5 4 8 8 H 1.09003 * 110.51232 * 94.66336 * 7 6 5 9 9 C 1.50696 * 110.51126 * 217.24001 * 7 6 5 10 10 O 1.21437 * 120.00187 * 93.54319 * 9 7 6 11 11 C 1.41023 * 120.00047 * 273.54497 * 9 7 6 12 12 H 1.08003 * 120.00009 * 353.72828 * 11 9 7 13 13 C 1.40462 * 120.00454 * 173.73302 * 11 9 7 14 14 N 1.30524 * 119.99738 * 6.25357 * 13 11 9 15 15 Si 1.86797 * 120.00384 * 186.25764 * 13 11 9 16 16 H 1.48503 * 109.47379 * 94.98296 * 15 13 11 17 17 H 1.48502 * 109.47260 * 214.98519 * 15 13 11 18 18 H 1.48503 * 109.46988 * 334.97944 * 15 13 11 19 19 H 1.09004 * 109.47065 * 297.39688 * 1 2 3 20 20 H 1.08998 * 109.47096 * 57.39935 * 1 2 3 21 21 H 1.09005 * 109.47170 * 177.39753 * 1 2 3 22 22 H 1.09002 * 110.36985 * 24.16687 * 4 2 1 23 23 H 1.09000 * 110.36793 * 146.50664 * 4 2 1 24 24 H 1.08995 * 110.37194 * 281.68113 * 6 5 4 25 25 H 1.09005 * 110.37028 * 159.34246 * 6 5 4 26 26 H 0.96991 * 119.99931 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7828 -1.2168 5 8 2.3070 -2.1187 -0.7211 6 6 2.8757 -1.9415 0.5947 7 6 2.0714 -0.7798 1.2191 8 1 1.2490 -1.1653 1.8218 9 6 2.9701 0.0962 2.0533 10 8 3.4847 1.0804 1.5621 11 6 3.2136 -0.2269 3.4042 12 1 2.6786 -1.0416 3.8695 13 6 4.1518 0.5108 4.1448 14 7 4.7083 1.5697 3.6226 15 14 4.6032 -0.0235 5.8769 16 1 5.8269 -0.8636 5.8327 17 1 4.8562 1.1761 6.7148 18 1 3.4851 -0.8077 6.4601 19 1 -0.3633 0.4729 0.9124 20 1 -0.3633 0.5537 -0.8657 21 1 -0.3634 -1.0266 -0.0467 22 1 1.3311 -0.8000 -2.0168 23 1 3.0024 -0.3393 -1.5696 24 1 3.9301 -1.6756 0.5196 25 1 2.7534 -2.8488 1.1863 26 1 5.3565 2.0789 4.1338 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575578699.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = -124.064650 kcal Electronic energy + Delta-G solvation = -11419.018792 eV Core-core repulsion = 9268.275412 eV Total energy + Delta-G solvation = -2150.743380 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.79431 -38.30159 -34.86455 -34.04778 -31.32594 -28.64674 -27.23160 -24.31772 -22.31381 -20.44158 -18.62739 -17.59076 -17.00466 -16.41766 -16.03989 -15.26151 -14.95872 -14.25449 -14.07385 -13.57196 -13.40220 -13.15670 -12.86917 -12.71282 -12.25083 -12.08886 -11.72737 -11.58008 -11.51421 -10.98117 -10.70238 -9.53673 -8.32604 -7.11658 1.33520 1.37473 1.54179 2.14595 2.20412 3.04823 3.29069 3.76016 3.97827 4.09774 4.30505 4.37860 4.62004 4.67210 4.76009 4.85099 4.86656 5.05363 5.09592 5.19007 5.25231 5.41463 5.83203 5.96753 6.70663 6.79443 8.25053 8.48860 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.064743 B = 0.011826 C = 0.011380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.374573 B = 2367.042602 C = 2459.861573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 H 0.063 0.937 4 C 0.054 3.946 5 O -0.387 6.387 6 C 0.072 3.928 7 C -0.156 4.156 8 H 0.090 0.910 9 C 0.349 3.651 10 O -0.591 6.591 11 C -0.562 4.562 12 H 0.086 0.914 13 C 0.026 3.974 14 N -0.789 5.789 15 Si 0.993 3.007 16 H -0.260 1.260 17 H -0.269 1.269 18 H -0.247 1.247 19 H 0.048 0.952 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.119 0.881 23 H 0.045 0.955 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -5.290 -1.702 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 H 0.081 0.919 4 C -0.022 4.022 5 O -0.306 6.306 6 C -0.004 4.004 7 C -0.176 4.176 8 H 0.108 0.892 9 C 0.248 3.752 10 O -0.484 6.484 11 C -0.592 4.592 12 H 0.105 0.895 13 C -0.193 4.193 14 N -0.418 5.418 15 Si 0.811 3.189 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.170 1.170 19 H 0.067 0.933 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.137 0.863 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.128 0.872 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.563 -4.889 -2.094 7.008 hybrid contribution 0.495 0.281 0.836 1.011 sum -4.068 -4.609 -1.259 6.275 Atomic orbital electron populations 1.21724 0.92283 1.02427 1.02078 1.22454 0.97904 0.99900 0.93983 0.91865 1.23526 1.00074 0.82003 0.96639 1.88979 1.83196 1.27072 1.31363 1.23133 0.95551 0.98383 0.83365 1.23022 0.99576 0.97310 0.97656 0.89151 1.19998 0.81334 0.84712 0.89198 1.90343 1.52502 1.30190 1.75397 1.21357 1.22834 1.16747 0.98301 0.89548 1.27262 0.94140 0.92984 1.04908 1.70085 1.19656 1.12972 1.39113 0.85078 0.79820 0.78946 0.75026 1.18439 1.19323 1.17020 0.93329 0.90743 0.91472 0.86267 0.93711 0.94656 0.87156 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.94 71.98 0.64 -3.32 15 2 C -0.12 -4.92 3.25 -9.77 -0.03 -4.95 15 3 H 0.06 2.96 6.74 -2.39 -0.02 2.95 15 4 C 0.05 1.90 7.18 72.49 0.52 2.42 15 5 O -0.39 -14.70 11.65 -148.98 -1.74 -16.43 15 6 C 0.07 2.94 7.17 72.48 0.52 3.46 15 7 C -0.16 -6.95 3.02 -10.52 -0.03 -6.98 15 8 H 0.09 3.74 7.73 -2.39 -0.02 3.72 15 9 C 0.35 19.78 5.97 26.37 0.16 19.94 15 10 O -0.59 -38.43 14.10 -3.52 -0.05 -38.48 15 11 C -0.56 -31.10 9.22 23.50 0.22 -30.88 15 12 H 0.09 4.33 7.86 -2.91 -0.02 4.31 15 13 C 0.03 1.41 5.50 85.43 0.47 1.88 15 14 N -0.79 -46.52 11.75 21.91 0.26 -46.26 15 15 Si 0.99 39.19 29.57 68.60 2.03 41.22 15 16 H -0.26 -9.80 7.11 99.48 0.71 -9.10 15 17 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 18 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 19 H 0.05 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.07 1.89 8.14 -2.38 -0.02 1.87 15 22 H 0.12 3.28 7.87 -2.39 -0.02 3.26 15 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.04 1.58 7.86 -2.39 -0.02 1.56 15 25 H 0.11 3.87 8.14 -2.38 -0.02 3.85 15 26 H 0.28 14.83 8.29 -92.71 -0.77 14.06 15 Total: -1.00 -68.82 225.72 4.12 -64.70 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.16 Total: 13.69 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 2.46 Total: -18.43 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.26 Total: -46.26 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -1.79 Total: -54.91 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -68.82 4.12 -64.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575578699.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.370 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds