Wall clock time and date at job start Mon Mar 30 2020 02:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47250 * 2 1 4 4 C 1.52995 * 109.47063 * 239.99743 * 2 1 3 5 5 O 1.42900 * 109.47194 * 185.00190 * 4 2 1 6 6 C 1.50697 * 109.47402 * 305.00317 * 4 2 1 7 7 H 1.07996 * 120.00052 * 35.27145 * 6 4 2 8 8 C 1.37883 * 120.00145 * 215.27373 * 6 4 2 9 9 N 1.31516 * 119.99610 * 355.91836 * 8 6 4 10 10 Si 1.86800 * 120.00149 * 175.91950 * 8 6 4 11 11 H 1.48502 * 109.46874 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47115 * 119.99598 * 10 8 6 13 13 H 1.48495 * 109.47353 * 240.00146 * 10 8 6 14 14 C 1.53002 * 109.46937 * 65.00148 * 4 2 1 15 15 C 1.52999 * 117.49835 * 254.19148 * 14 4 2 16 16 C 1.52998 * 60.00176 * 252.51159 * 15 14 4 17 17 H 1.09004 * 109.47299 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47038 * 300.00285 * 1 2 3 19 19 H 1.08999 * 109.46716 * 60.00324 * 1 2 3 20 20 H 1.09005 * 109.46675 * 120.00115 * 2 1 3 21 21 H 1.09006 * 109.47211 * 60.00112 * 3 2 1 22 22 H 1.08994 * 109.47428 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47238 * 300.00428 * 3 2 1 24 24 H 0.96700 * 114.00215 * 59.99684 * 5 4 2 25 25 H 0.97001 * 119.99138 * 174.88729 * 9 8 6 26 26 H 1.08994 * 115.55140 * 39.90651 * 14 4 2 27 27 H 1.08998 * 117.49826 * 0.02562 * 15 14 4 28 28 H 1.09005 * 117.49370 * 145.02179 * 15 14 4 29 29 H 1.09005 * 117.50243 * 252.51190 * 16 15 14 30 30 H 1.09003 * 117.49581 * 107.49199 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4642 -0.8239 -1.1919 6 6 1.4391 -2.1018 -1.3127 7 1 0.4291 -2.2674 -0.9682 8 6 2.1789 -3.1535 -1.8106 9 7 3.3787 -2.9379 -2.3042 10 14 1.4768 -4.8843 -1.7843 11 1 0.1199 -4.8590 -1.1814 12 1 1.3927 -5.4056 -3.1722 13 1 2.3599 -5.7645 -0.9776 14 6 1.6353 0.0689 -2.4953 15 6 0.4979 -0.4938 -3.3500 16 6 1.9397 -0.5564 -3.8581 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 1.6768 1.9563 0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 3.7928 -1.3135 -0.4256 25 1 3.9286 -3.6856 -2.5860 26 1 1.7127 1.1528 -2.4103 27 1 0.0377 -1.4266 -3.0244 28 1 -0.1734 0.2201 -3.8275 29 1 2.2170 0.1162 -4.6698 30 1 2.4282 -1.5308 -3.8669 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642820658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:51 Heat of formation + Delta-G solvation = -23.223270 kcal Electronic energy + Delta-G solvation = -12235.524674 eV Core-core repulsion = 10224.987198 eV Total energy + Delta-G solvation = -2010.537475 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.98383 -34.10699 -32.89526 -31.72527 -26.99148 -25.80786 -23.32203 -20.98386 -20.70260 -18.02233 -16.54458 -14.94225 -14.49057 -14.37304 -13.77802 -13.08250 -12.41589 -12.16923 -11.66691 -11.61159 -11.06509 -10.92169 -10.58837 -10.53126 -10.20559 -10.09459 -9.80636 -9.61199 -9.07148 -8.93804 -8.57130 -8.30236 -7.87852 -5.79690 -4.02855 3.28734 3.38893 3.41401 4.44328 5.15426 5.29513 5.81918 5.90883 6.00427 6.16912 6.28734 6.38072 6.41988 6.61074 6.66140 6.72366 6.77983 6.80284 6.98275 7.17265 7.18895 7.31590 7.46678 7.77801 7.85160 8.00252 8.34326 8.90326 9.53880 9.77734 11.10104 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.039924 B = 0.018206 C = 0.017065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.159136 B = 1537.582711 C = 1640.383375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C -0.142 4.142 4 C 0.281 3.719 5 O -0.534 6.534 6 C -0.551 4.551 7 H 0.061 0.939 8 C 0.076 3.924 9 N -0.843 5.843 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.123 4.123 15 C -0.176 4.176 16 C -0.168 4.168 17 H 0.061 0.939 18 H 0.027 0.973 19 H 0.048 0.952 20 H 0.054 0.946 21 H 0.032 0.968 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.350 0.650 25 H 0.252 0.748 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 3.735 1.943 5.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.240 3.760 5 O -0.336 6.336 6 C -0.589 4.589 7 H 0.079 0.921 8 C -0.128 4.128 9 N -0.480 5.480 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.141 4.141 15 C -0.213 4.213 16 C -0.205 4.205 17 H 0.080 0.920 18 H 0.046 0.954 19 H 0.067 0.933 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.194 0.806 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.909 4.007 1.226 5.101 hybrid contribution -0.386 -1.300 0.519 1.452 sum -3.295 2.707 1.745 4.608 Atomic orbital electron populations 1.21723 0.96264 1.01692 0.99250 1.21785 0.95558 0.94972 1.00907 1.21864 1.00983 0.97458 0.99656 1.18115 0.79756 0.91209 0.86873 1.86398 1.20921 1.76673 1.49612 1.21726 1.00902 0.93483 1.42788 0.92096 1.25032 0.95359 0.98135 0.94307 1.70254 1.08846 1.29420 1.39433 0.86891 0.79402 0.86162 0.77650 1.19921 1.21140 1.21153 1.22219 1.02429 0.95852 0.93620 1.22858 0.91227 1.02706 1.04523 1.22866 0.97902 1.04183 0.95545 0.91991 0.95385 0.93270 0.92777 0.94909 0.92909 0.93170 0.80614 0.93703 0.91140 0.87869 0.92138 0.92537 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.68 37.16 0.32 -2.21 16 2 C -0.11 -2.35 2.48 -90.62 -0.23 -2.57 16 3 C -0.14 -2.64 8.73 37.15 0.32 -2.31 16 4 C 0.28 6.70 0.53 -91.77 -0.05 6.65 16 5 O -0.53 -13.66 10.11 -35.23 -0.36 -14.01 16 6 C -0.55 -14.12 5.36 -34.44 -0.18 -14.30 16 7 H 0.06 1.57 5.84 -52.49 -0.31 1.27 16 8 C 0.08 2.01 4.77 -17.82 -0.09 1.92 16 9 N -0.84 -23.07 9.79 55.43 0.54 -22.53 16 10 Si 0.87 20.54 29.54 -169.99 -5.02 15.51 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C -0.12 -2.82 4.12 -90.62 -0.37 -3.20 16 15 C -0.18 -3.84 9.42 -26.73 -0.25 -4.09 16 16 C -0.17 -3.96 9.93 -26.73 -0.27 -4.22 16 17 H 0.06 1.25 6.11 -51.93 -0.32 0.93 16 18 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 19 H 0.05 0.93 7.10 -51.93 -0.37 0.56 16 20 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 1.00 7.82 -51.93 -0.41 0.59 16 23 H 0.05 0.92 6.04 -51.93 -0.31 0.61 16 24 H 0.35 8.59 8.88 45.56 0.40 8.99 16 25 H 0.25 6.71 8.32 -40.82 -0.34 6.37 16 26 H 0.07 1.55 5.94 -51.93 -0.31 1.24 16 27 H 0.10 2.40 6.57 -51.93 -0.34 2.06 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.12 3.29 5.79 -51.93 -0.30 2.99 16 LS Contribution 233.90 15.07 3.52 3.52 Total: -1.00 -27.05 233.90 -5.60 -32.66 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.51 Total: 9.18 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -0.79 Total: -24.34 kcal Atomic # 7 Polarization: -23.07 SS G_CDS: 0.54 Total: -22.53 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.36 Total: -14.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.05 -5.60 -32.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642820658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.433 kcal (2) G-P(sol) polarization free energy of solvation -27.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds