Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47250 * 2 1 4 4 C 1.52995 * 109.47063 * 239.99743 * 2 1 3 5 5 O 1.42900 * 109.47194 * 185.00190 * 4 2 1 6 6 C 1.50697 * 109.47402 * 305.00317 * 4 2 1 7 7 H 1.07996 * 120.00052 * 35.27145 * 6 4 2 8 8 C 1.37883 * 120.00145 * 215.27373 * 6 4 2 9 9 N 1.31516 * 119.99610 * 355.91836 * 8 6 4 10 10 Si 1.86800 * 120.00149 * 175.91950 * 8 6 4 11 11 H 1.48502 * 109.46874 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47115 * 119.99598 * 10 8 6 13 13 H 1.48495 * 109.47353 * 240.00146 * 10 8 6 14 14 C 1.53002 * 109.46937 * 65.00148 * 4 2 1 15 15 C 1.52999 * 117.49835 * 254.19148 * 14 4 2 16 16 C 1.52998 * 60.00176 * 252.51159 * 15 14 4 17 17 H 1.09004 * 109.47299 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47038 * 300.00285 * 1 2 3 19 19 H 1.08999 * 109.46716 * 60.00324 * 1 2 3 20 20 H 1.09005 * 109.46675 * 120.00115 * 2 1 3 21 21 H 1.09006 * 109.47211 * 60.00112 * 3 2 1 22 22 H 1.08994 * 109.47428 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47238 * 300.00428 * 3 2 1 24 24 H 0.96700 * 114.00215 * 59.99684 * 5 4 2 25 25 H 0.97001 * 119.99138 * 174.88729 * 9 8 6 26 26 H 1.08994 * 115.55140 * 39.90651 * 14 4 2 27 27 H 1.08998 * 117.49826 * 0.02562 * 15 14 4 28 28 H 1.09005 * 117.49370 * 145.02179 * 15 14 4 29 29 H 1.09005 * 117.50243 * 252.51190 * 16 15 14 30 30 H 1.09003 * 117.49581 * 107.49199 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4642 -0.8239 -1.1919 6 6 1.4391 -2.1018 -1.3127 7 1 0.4291 -2.2674 -0.9682 8 6 2.1789 -3.1535 -1.8106 9 7 3.3787 -2.9379 -2.3042 10 14 1.4768 -4.8843 -1.7843 11 1 0.1199 -4.8590 -1.1814 12 1 1.3927 -5.4056 -3.1722 13 1 2.3599 -5.7645 -0.9776 14 6 1.6353 0.0689 -2.4953 15 6 0.4979 -0.4938 -3.3500 16 6 1.9397 -0.5564 -3.8581 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 1.6768 1.9563 0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 3.7928 -1.3135 -0.4256 25 1 3.9286 -3.6856 -2.5860 26 1 1.7127 1.1528 -2.4103 27 1 0.0377 -1.4266 -3.0244 28 1 -0.1734 0.2201 -3.8275 29 1 2.2170 0.1162 -4.6698 30 1 2.4282 -1.5308 -3.8669 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642820658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = -39.831612 kcal Electronic energy + Delta-G solvation = -12236.244865 eV Core-core repulsion = 10224.987198 eV Total energy + Delta-G solvation = -2011.257667 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.78425 -35.91636 -34.67079 -33.71130 -28.75378 -27.47085 -25.19560 -22.78235 -22.39409 -19.84687 -18.50319 -16.77497 -16.34432 -16.21549 -15.60119 -14.79185 -14.17280 -13.88534 -13.43151 -13.21898 -12.83383 -12.64689 -12.40918 -12.34922 -11.92990 -11.82567 -11.63435 -11.34336 -10.87661 -10.73240 -10.52963 -10.18660 -9.76985 -7.80252 -6.06646 1.39102 1.45516 1.51953 2.48226 3.28560 3.34424 4.10790 4.30276 4.35503 4.56144 4.59889 4.67786 4.90161 4.95111 5.03831 5.07600 5.14398 5.22139 5.26494 5.54224 5.57838 5.63502 5.69487 5.86991 5.95860 6.08896 6.38803 6.91254 7.52756 7.82920 9.08155 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.039924 B = 0.018206 C = 0.017065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.159136 B = 1537.582711 C = 1640.383375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.269 3.731 5 O -0.549 6.549 6 C -0.551 4.551 7 H 0.057 0.943 8 C 0.037 3.963 9 N -0.868 5.868 10 Si 0.923 3.077 11 H -0.271 1.271 12 H -0.291 1.291 13 H -0.285 1.285 14 C -0.129 4.129 15 C -0.157 4.157 16 C -0.184 4.184 17 H 0.045 0.955 18 H 0.054 0.946 19 H 0.051 0.949 20 H 0.046 0.954 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.349 0.651 25 H 0.248 0.752 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 4.715 2.316 6.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.229 3.771 5 O -0.351 6.351 6 C -0.589 4.589 7 H 0.075 0.925 8 C -0.165 4.165 9 N -0.506 5.506 10 Si 0.751 3.249 11 H -0.196 1.196 12 H -0.217 1.217 13 H -0.212 1.212 14 C -0.148 4.148 15 C -0.194 4.194 16 C -0.221 4.221 17 H 0.064 0.936 18 H 0.073 0.927 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.192 0.808 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.072 4.987 1.607 6.636 hybrid contribution -0.041 -1.590 0.406 1.642 sum -4.112 3.397 2.013 5.701 Atomic orbital electron populations 1.21645 0.94872 1.01069 1.00702 1.21696 0.96693 0.96006 0.98796 1.21774 1.00339 0.96002 1.01075 1.18341 0.78889 0.91030 0.88877 1.86382 1.22249 1.76623 1.49854 1.21954 1.00597 0.94648 1.41719 0.92541 1.25539 0.95696 1.00825 0.94475 1.70377 1.09798 1.29778 1.40600 0.86078 0.78833 0.82978 0.77058 1.19578 1.21744 1.21151 1.22297 1.03088 0.96521 0.92881 1.22820 0.90697 1.02505 1.03345 1.22786 0.99352 1.03154 0.96851 0.93636 0.92688 0.93016 0.93578 0.92261 0.93879 0.92894 0.80757 0.94202 0.89628 0.89677 0.88725 0.90559 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.68 71.98 0.62 -3.86 16 2 C -0.11 -4.47 2.48 -10.80 -0.03 -4.50 16 3 C -0.13 -4.63 8.73 71.98 0.63 -4.00 16 4 C 0.27 12.60 0.53 -11.54 -0.01 12.59 16 5 O -0.55 -28.16 10.11 -148.98 -1.51 -29.66 16 6 C -0.55 -28.06 5.36 25.60 0.14 -27.92 16 7 H 0.06 2.89 5.84 -2.91 -0.02 2.87 16 8 C 0.04 1.93 4.77 84.66 0.40 2.34 16 9 N -0.87 -48.16 9.79 21.45 0.21 -47.95 16 10 Si 0.92 42.47 29.54 68.60 2.03 44.49 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 14 C -0.13 -5.75 4.12 -10.79 -0.04 -5.79 16 15 C -0.16 -6.52 9.42 30.59 0.29 -6.23 16 16 C -0.18 -8.51 9.93 30.59 0.30 -8.20 16 17 H 0.04 1.75 6.11 -2.39 -0.01 1.74 16 18 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 19 H 0.05 1.80 7.10 -2.39 -0.02 1.78 16 20 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 21 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 22 H 0.04 1.54 7.82 -2.39 -0.02 1.52 16 23 H 0.05 1.78 6.04 -2.39 -0.01 1.76 16 24 H 0.35 17.40 8.88 -74.06 -0.66 16.74 16 25 H 0.25 13.44 8.32 -92.71 -0.77 12.67 16 26 H 0.09 3.53 5.94 -2.39 -0.01 3.52 16 27 H 0.08 3.86 6.57 -2.39 -0.02 3.84 16 28 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 29 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 30 H 0.09 4.78 5.79 -2.39 -0.01 4.77 16 Total: -1.00 -56.12 233.90 3.51 -52.61 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.47 Total: 26.09 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 2.31 Total: -45.58 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.21 Total: -47.95 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.51 Total: -29.66 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -56.12 3.51 -52.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642820658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.777 kcal (2) G-P(sol) polarization free energy of solvation -56.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds