Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47185 * 2 1 4 4 C 1.53007 * 109.46899 * 120.00224 * 2 1 3 5 5 C 1.53000 * 115.54634 * 302.31090 * 4 2 1 6 6 H 1.09004 * 109.47028 * 305.72867 * 5 4 2 7 7 O 1.42897 * 109.47498 * 65.73363 * 5 4 2 8 8 C 1.50701 * 109.46534 * 185.73273 * 5 4 2 9 9 H 1.08002 * 120.00448 * 354.75004 * 8 5 4 10 10 C 1.37887 * 119.99723 * 174.75151 * 8 5 4 11 11 N 1.31508 * 119.99821 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99791 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47492 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47060 * 120.00126 * 12 10 8 15 15 H 1.48506 * 109.46848 * 239.99631 * 12 10 8 16 16 C 1.53001 * 117.49920 * 87.97999 * 4 2 1 17 17 C 1.52990 * 117.49594 * 156.63708 * 4 2 1 18 18 H 1.09004 * 109.47681 * 186.18444 * 1 2 3 19 19 H 1.09003 * 109.47257 * 306.18377 * 1 2 3 20 20 H 1.09001 * 109.46907 * 66.18447 * 1 2 3 21 21 H 1.09002 * 109.46359 * 239.99757 * 2 1 3 22 22 H 1.08999 * 109.46785 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.46960 * 299.99804 * 3 2 1 24 24 H 1.09000 * 109.47127 * 60.00031 * 3 2 1 25 25 H 0.96700 * 114.00238 * 59.99782 * 7 5 4 26 26 H 0.97001 * 120.00170 * 180.02562 * 11 10 8 27 27 H 1.08999 * 117.49846 * 215.00402 * 16 4 2 28 28 H 1.08997 * 117.49708 * 0.02562 * 16 4 2 29 29 H 1.08998 * 117.50739 * 359.97438 * 17 4 2 30 30 H 1.09009 * 117.49640 * 144.99579 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5642 -0.1450 2.5844 6 1 1.8052 0.9172 2.6281 7 8 0.1506 -0.3181 2.7013 8 6 2.2536 -0.8634 3.7156 9 1 2.8949 -1.7073 3.5084 10 6 2.0654 -0.4433 5.0154 11 7 1.2849 0.5845 5.2677 12 14 2.9204 -1.3334 6.4176 13 1 3.7370 -2.4473 5.8722 14 1 3.8006 -0.3830 7.1435 15 1 1.9026 -1.8778 7.3520 16 6 2.2304 -2.2369 1.1617 17 6 3.4500 -1.3128 1.1973 18 1 -0.3634 -1.0217 0.1107 19 1 -0.3634 0.6067 0.8295 20 1 -0.3633 0.4150 -0.9402 21 1 1.8932 -0.5139 -0.8900 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 -0.1366 -1.2409 2.6703 26 1 1.1528 0.8803 6.1820 27 1 2.0167 -2.8235 2.0553 28 1 1.9927 -2.7201 0.2140 29 1 4.0143 -1.1884 0.2731 30 1 4.0389 -1.2913 2.1144 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642842687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = -42.997198 kcal Electronic energy + Delta-G solvation = -11925.204485 eV Core-core repulsion = 9913.809548 eV Total energy + Delta-G solvation = -2011.394937 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.40627 -34.18131 -32.82845 -31.95525 -26.89258 -26.36302 -23.53545 -21.45740 -21.32884 -17.78290 -17.01834 -14.97248 -14.40657 -14.29607 -13.80226 -13.21208 -12.94362 -12.32541 -12.23966 -11.62852 -11.23688 -10.94519 -10.78614 -10.64054 -10.54823 -10.42145 -10.31070 -10.05024 -9.52931 -8.84843 -8.69856 -8.46402 -7.90649 -5.97929 -4.12881 3.27969 3.36635 3.39433 4.41635 4.67343 5.30310 5.40552 5.58765 5.75311 5.85003 6.05442 6.11152 6.24641 6.29300 6.40868 6.43319 6.57065 6.60103 6.76792 6.81955 6.95931 7.07163 7.13033 7.28101 7.81142 7.92974 8.27771 8.91528 9.44777 9.63653 11.07260 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050556 B = 0.014239 C = 0.012877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.705569 B = 1965.896457 C = 2173.834608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.135 4.135 5 C 0.264 3.736 6 H 0.063 0.937 7 O -0.562 6.562 8 C -0.566 4.566 9 H 0.062 0.938 10 C 0.078 3.922 11 N -0.864 5.864 12 Si 0.885 3.115 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.178 4.178 17 C -0.172 4.172 18 H 0.046 0.954 19 H 0.080 0.920 20 H 0.032 0.968 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.343 0.657 26 H 0.259 0.741 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -2.138 -7.494 7.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.136 4.136 5 C 0.207 3.793 6 H 0.080 0.920 7 O -0.365 6.365 8 C -0.603 4.603 9 H 0.080 0.920 10 C -0.127 4.127 11 N -0.501 5.501 12 Si 0.712 3.288 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.215 4.215 17 C -0.209 4.209 18 H 0.065 0.935 19 H 0.099 0.901 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.186 0.814 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.978 -1.344 -7.322 7.508 hybrid contribution 0.622 -1.138 0.790 1.518 sum 1.599 -2.482 -6.532 7.168 Atomic orbital electron populations 1.21827 0.94985 1.01921 1.00891 1.20553 0.95928 0.95389 0.95269 1.21776 1.00439 0.96426 1.01243 1.22564 0.98477 0.93930 0.98618 1.18825 0.78489 0.96195 0.85802 0.91961 1.86542 1.25303 1.28527 1.96106 1.21862 1.30139 1.16501 0.91840 0.91956 1.25045 0.94334 0.94505 0.98862 1.70064 1.35696 1.24675 1.19657 0.86679 0.79536 0.79878 0.82659 1.19760 1.21008 1.21010 1.22868 1.03682 0.93589 1.01327 1.22943 0.91174 1.04962 1.01803 0.93476 0.90148 0.94920 0.93355 0.93305 0.93916 0.91863 0.81378 0.93143 0.88515 0.91036 0.91101 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.15 37.16 0.30 -2.12 16 2 C -0.05 -0.95 2.74 -90.62 -0.25 -1.20 16 3 C -0.14 -2.44 8.98 37.15 0.33 -2.11 16 4 C -0.14 -2.76 1.41 -154.51 -0.22 -2.98 16 5 C 0.26 6.55 2.55 -27.88 -0.07 6.48 16 6 H 0.06 1.74 6.86 -51.93 -0.36 1.38 16 7 O -0.56 -14.03 10.30 -35.23 -0.36 -14.40 16 8 C -0.57 -15.14 7.34 -34.44 -0.25 -15.39 16 9 H 0.06 1.63 5.12 -52.49 -0.27 1.36 16 10 C 0.08 2.16 5.43 -17.82 -0.10 2.07 16 11 N -0.86 -25.49 13.06 55.43 0.72 -24.77 16 12 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 C -0.18 -3.37 9.44 -26.70 -0.25 -3.62 16 17 C -0.17 -3.33 9.40 -26.70 -0.25 -3.58 16 18 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 19 H 0.08 1.59 6.38 -51.93 -0.33 1.26 16 20 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.21 6.89 -51.93 -0.36 0.85 16 25 H 0.34 7.79 9.04 45.56 0.41 8.20 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.10 1.95 7.03 -51.93 -0.37 1.59 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.10 2.18 6.44 -51.92 -0.33 1.84 16 LS Contribution 242.67 15.07 3.66 3.66 Total: -1.00 -28.73 242.67 -5.45 -34.18 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -3.69 Total: 7.61 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -0.75 Total: -22.45 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.72 Total: -24.77 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.36 Total: -14.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.73 -5.45 -34.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.821 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds