Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47185 * 2 1 4 4 C 1.53007 * 109.46899 * 120.00224 * 2 1 3 5 5 C 1.53000 * 115.54634 * 302.31090 * 4 2 1 6 6 H 1.09004 * 109.47028 * 305.72867 * 5 4 2 7 7 O 1.42897 * 109.47498 * 65.73363 * 5 4 2 8 8 C 1.50701 * 109.46534 * 185.73273 * 5 4 2 9 9 H 1.08002 * 120.00448 * 354.75004 * 8 5 4 10 10 C 1.37887 * 119.99723 * 174.75151 * 8 5 4 11 11 N 1.31508 * 119.99821 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99791 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47492 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47060 * 120.00126 * 12 10 8 15 15 H 1.48506 * 109.46848 * 239.99631 * 12 10 8 16 16 C 1.53001 * 117.49920 * 87.97999 * 4 2 1 17 17 C 1.52990 * 117.49594 * 156.63708 * 4 2 1 18 18 H 1.09004 * 109.47681 * 186.18444 * 1 2 3 19 19 H 1.09003 * 109.47257 * 306.18377 * 1 2 3 20 20 H 1.09001 * 109.46907 * 66.18447 * 1 2 3 21 21 H 1.09002 * 109.46359 * 239.99757 * 2 1 3 22 22 H 1.08999 * 109.46785 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.46960 * 299.99804 * 3 2 1 24 24 H 1.09000 * 109.47127 * 60.00031 * 3 2 1 25 25 H 0.96700 * 114.00238 * 59.99782 * 7 5 4 26 26 H 0.97001 * 120.00170 * 180.02562 * 11 10 8 27 27 H 1.08999 * 117.49846 * 215.00402 * 16 4 2 28 28 H 1.08997 * 117.49708 * 0.02562 * 16 4 2 29 29 H 1.08998 * 117.50739 * 359.97438 * 17 4 2 30 30 H 1.09009 * 117.49640 * 144.99579 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5642 -0.1450 2.5844 6 1 1.8052 0.9172 2.6281 7 8 0.1506 -0.3181 2.7013 8 6 2.2536 -0.8634 3.7156 9 1 2.8949 -1.7073 3.5084 10 6 2.0654 -0.4433 5.0154 11 7 1.2849 0.5845 5.2677 12 14 2.9204 -1.3334 6.4176 13 1 3.7370 -2.4473 5.8722 14 1 3.8006 -0.3830 7.1435 15 1 1.9026 -1.8778 7.3520 16 6 2.2304 -2.2369 1.1617 17 6 3.4500 -1.3128 1.1973 18 1 -0.3634 -1.0217 0.1107 19 1 -0.3634 0.6067 0.8295 20 1 -0.3633 0.4150 -0.9402 21 1 1.8932 -0.5139 -0.8900 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 -0.1366 -1.2409 2.6703 26 1 1.1528 0.8803 6.1820 27 1 2.0167 -2.8235 2.0553 28 1 1.9927 -2.7201 0.2140 29 1 4.0143 -1.1884 0.2731 30 1 4.0389 -1.2913 2.1144 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = -61.631804 kcal Electronic energy + Delta-G solvation = -11926.012542 eV Core-core repulsion = 9913.809548 eV Total energy + Delta-G solvation = -2012.202994 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05184 -36.07860 -34.49664 -33.86077 -28.85857 -27.82112 -25.41238 -23.00308 -22.90734 -19.44562 -19.05205 -16.82913 -16.25195 -15.97218 -15.53576 -14.99020 -14.51893 -14.05452 -13.80517 -13.23492 -12.86122 -12.77694 -12.71706 -12.26232 -12.09133 -12.00013 -11.90734 -11.80538 -11.18521 -10.74137 -10.44956 -10.32765 -9.81117 -8.10107 -6.31077 1.37704 1.39940 1.50751 2.40283 3.08865 3.21521 3.94658 4.07737 4.26071 4.30239 4.52393 4.66535 4.70213 4.85989 4.93109 4.94558 5.15507 5.18330 5.21076 5.29909 5.51062 5.53653 5.56683 5.69701 5.79050 5.90725 6.21603 6.82654 7.40240 7.62546 8.95422 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050556 B = 0.014239 C = 0.012877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.705569 B = 1965.896457 C = 2173.834608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C -0.139 4.139 4 C -0.148 4.148 5 C 0.266 3.734 6 H 0.020 0.980 7 O -0.573 6.573 8 C -0.569 4.569 9 H 0.068 0.932 10 C 0.022 3.978 11 N -0.907 5.907 12 Si 0.952 3.048 13 H -0.263 1.263 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.163 4.163 17 C -0.169 4.169 18 H 0.049 0.951 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.030 0.970 25 H 0.351 0.649 26 H 0.258 0.742 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -3.437 -8.927 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.196 4.196 4 C -0.148 4.148 5 C 0.209 3.791 6 H 0.038 0.962 7 O -0.377 6.377 8 C -0.607 4.607 9 H 0.086 0.914 10 C -0.179 4.179 11 N -0.546 5.546 12 Si 0.778 3.222 13 H -0.187 1.187 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.200 4.200 17 C -0.206 4.206 18 H 0.068 0.932 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.195 0.805 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.671 -2.659 -8.764 9.309 hybrid contribution 0.394 -0.717 1.209 1.459 sum 2.065 -3.376 -7.555 8.529 Atomic orbital electron populations 1.21739 0.94791 1.01630 1.00902 1.20586 0.96075 0.95450 0.94779 1.21748 1.00676 0.96266 1.00943 1.22332 0.99718 0.95362 0.97387 1.18567 0.78326 0.93984 0.88201 0.96171 1.86505 1.25526 1.29264 1.96425 1.22249 1.29610 1.16267 0.92594 0.91417 1.25876 0.95116 0.95263 1.01664 1.70207 1.37734 1.26547 1.20078 0.85622 0.78411 0.78812 0.79400 1.18685 1.20862 1.20869 1.22877 1.02640 0.92286 1.02150 1.22948 0.90801 1.04640 1.02172 0.93174 0.93383 0.92325 0.90645 0.92909 0.91225 0.95099 0.80457 0.93289 0.90163 0.87913 0.88142 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.15 71.98 0.59 -3.82 16 2 C -0.05 -1.69 2.74 -10.79 -0.03 -1.72 16 3 C -0.14 -4.60 8.98 71.98 0.65 -3.95 16 4 C -0.15 -5.82 1.41 -52.18 -0.07 -5.90 16 5 C 0.27 13.46 2.55 29.85 0.08 13.54 16 6 H 0.02 1.20 6.86 -2.39 -0.02 1.18 16 7 O -0.57 -29.25 10.30 -148.98 -1.53 -30.78 16 8 C -0.57 -30.74 7.34 25.60 0.19 -30.55 16 9 H 0.07 3.52 5.12 -2.91 -0.01 3.50 16 10 C 0.02 1.23 5.43 84.66 0.46 1.69 16 11 N -0.91 -54.91 13.06 21.45 0.28 -54.63 16 12 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 16 C -0.16 -5.73 9.44 30.62 0.29 -5.44 16 17 C -0.17 -6.15 9.40 30.61 0.29 -5.87 16 18 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 19 H 0.05 1.89 6.38 -2.39 -0.02 1.88 16 20 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.08 2.17 8.11 -2.39 -0.02 2.16 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.03 1.19 6.89 -2.39 -0.02 1.18 16 25 H 0.35 16.14 9.04 -74.06 -0.67 15.47 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.08 3.10 7.03 -2.39 -0.02 3.08 16 28 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.08 3.31 6.44 -2.38 -0.02 3.30 16 Total: -1.00 -61.86 242.67 3.65 -58.21 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.45 Total: 23.33 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 2.43 Total: -42.03 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.28 Total: -54.63 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.53 Total: -30.78 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.86 3.65 -58.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.423 kcal (2) G-P(sol) polarization free energy of solvation -61.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds