Wall clock time and date at job start Mon Mar 30 2020 02:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 115.54855 * 2 1 4 4 C 1.53076 * 117.49263 * 214.27573 * 2 1 3 5 5 C 1.53002 * 117.49965 * 145.67408 * 2 1 3 6 6 C 1.52999 * 117.49585 * 359.97437 * 5 2 1 7 7 C 1.52998 * 117.49714 * 214.98054 * 5 2 1 8 8 H 1.09002 * 109.47181 * 330.39306 * 7 5 2 9 9 O 1.42898 * 109.47596 * 90.39809 * 7 5 2 10 10 C 1.50698 * 109.47201 * 210.39776 * 7 5 2 11 11 H 1.07997 * 119.99776 * 354.88343 * 10 7 5 12 12 C 1.37879 * 120.00280 * 174.88091 * 10 7 5 13 13 N 1.31516 * 119.99947 * 179.97438 * 12 10 7 14 14 Si 1.86797 * 119.99740 * 0.02562 * 12 10 7 15 15 H 1.48491 * 109.47217 * 90.00367 * 14 12 10 16 16 H 1.48501 * 109.47175 * 329.99739 * 14 12 10 17 17 H 1.48504 * 109.46730 * 209.99837 * 14 12 10 18 18 H 1.08996 * 109.46915 * 274.32534 * 1 2 3 19 19 H 1.09001 * 109.47264 * 34.32849 * 1 2 3 20 20 H 1.08996 * 109.47153 * 154.32936 * 1 2 3 21 21 H 1.09004 * 109.47159 * 205.66909 * 3 2 1 22 22 H 1.08996 * 109.47578 * 325.66995 * 3 2 1 23 23 H 1.09003 * 109.47190 * 85.66969 * 3 2 1 24 24 H 1.09003 * 117.51041 * 145.03824 * 4 2 1 25 25 H 1.08997 * 117.49213 * 359.97438 * 4 2 1 26 26 H 1.08997 * 109.47076 * 280.11840 * 6 5 2 27 27 H 1.08995 * 109.47586 * 40.12389 * 6 5 2 28 28 H 1.09004 * 109.46772 * 160.12457 * 6 5 2 29 29 H 0.96703 * 114.00001 * 59.99307 * 9 7 5 30 30 H 0.96997 * 119.99922 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2367 -1.1221 -0.7647 5 6 2.2365 -1.1208 0.7653 6 6 1.3589 -2.1554 1.4725 7 6 3.5490 -0.7755 1.4716 8 1 4.0528 0.0258 0.9309 9 8 3.2734 -0.3489 2.8073 10 6 4.4363 -1.9931 1.5063 11 1 4.0670 -2.9408 1.1433 12 6 5.7195 -1.8972 2.0015 13 7 6.4936 -2.9600 2.0323 14 14 6.3579 -0.2582 2.6301 15 1 6.0556 -0.1317 4.0784 16 1 5.6993 0.8470 1.8885 17 1 7.8268 -0.1868 2.4231 18 1 -0.3633 0.0775 1.0247 19 1 -0.3634 0.8487 -0.5795 20 1 -0.3633 -0.9262 -0.4452 21 1 3.1823 1.3087 -0.4452 22 1 1.5810 2.0742 -0.5795 23 1 2.2766 1.7416 1.0248 24 1 3.1720 -0.8769 -1.2681 25 1 1.6113 -1.8600 -1.2671 26 1 1.0030 -1.7449 2.4174 27 1 0.5065 -2.4024 0.8396 28 1 1.9420 -3.0561 1.6644 29 1 2.8247 -1.0135 3.3478 30 1 7.3964 -2.8925 2.3803 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642876496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:12 Heat of formation + Delta-G solvation = -42.311425 kcal Electronic energy + Delta-G solvation = -11867.096561 eV Core-core repulsion = 9855.731361 eV Total energy + Delta-G solvation = -2011.365200 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.80180 -35.08654 -32.22791 -30.02049 -28.04771 -26.84923 -26.21035 -22.54275 -19.68979 -17.72762 -16.83273 -15.08849 -14.65102 -14.41998 -13.40305 -13.32755 -12.95177 -12.66815 -12.13894 -11.96002 -11.69159 -11.57616 -11.46348 -11.21913 -10.81864 -10.71571 -10.62295 -9.70768 -9.30063 -9.06302 -8.78889 -8.62442 -8.12780 -6.09533 -4.18852 3.43658 3.47591 3.58531 4.34888 4.50802 5.18227 5.26171 5.30406 5.50378 5.57110 5.92261 5.99222 6.02538 6.04157 6.22622 6.33488 6.34532 6.39316 6.48707 6.53090 6.62296 6.86471 6.87896 6.93845 7.44085 7.65463 8.36258 8.89048 9.06952 9.54898 11.01249 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.051121 B = 0.014790 C = 0.013483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.587595 B = 1892.744238 C = 2076.153336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.142 4.142 3 C -0.110 4.110 4 C -0.161 4.161 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.222 3.778 8 H 0.063 0.937 9 O -0.586 6.586 10 C -0.548 4.548 11 H 0.075 0.925 12 C 0.080 3.920 13 N -0.895 5.895 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.268 1.268 17 H -0.302 1.302 18 H 0.054 0.946 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.359 0.641 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 5.207 -2.666 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C -0.167 4.167 4 C -0.198 4.198 5 C -0.113 4.113 6 C -0.166 4.166 7 C 0.165 3.835 8 H 0.081 0.919 9 O -0.393 6.393 10 C -0.586 4.586 11 H 0.093 0.907 12 C -0.124 4.124 13 N -0.532 5.532 14 Si 0.733 3.267 15 H -0.203 1.203 16 H -0.193 1.193 17 H -0.230 1.230 18 H 0.073 0.927 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.205 0.795 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.827 5.687 -2.841 10.878 hybrid contribution 0.237 0.118 0.398 0.478 sum -8.590 5.805 -2.443 10.651 Atomic orbital electron populations 1.21260 0.93161 1.00776 1.01106 1.21651 0.93842 0.91649 1.07097 1.21285 0.99531 0.94115 1.01730 1.23121 1.01436 1.00207 0.95056 1.22287 0.98794 0.97024 0.93199 1.21205 0.97726 0.98564 0.99087 1.19526 0.88675 0.95461 0.79811 0.91899 1.86387 1.81135 1.45781 1.25947 1.21540 0.97678 0.96302 1.43038 0.90670 1.25034 0.96523 0.96791 0.94025 1.69956 1.08471 1.29300 1.45517 0.86399 0.75763 0.84325 0.80166 1.20271 1.19334 1.23026 0.92710 0.93139 0.93017 0.92679 0.93368 0.92060 0.89119 0.89949 0.93013 0.93847 0.91327 0.79469 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.72 37.16 0.32 -1.19 16 2 C -0.14 -2.45 2.70 -154.47 -0.42 -2.87 16 3 C -0.11 -1.84 8.58 37.16 0.32 -1.52 16 4 C -0.16 -2.97 9.23 -26.69 -0.25 -3.21 16 5 C -0.11 -2.24 1.79 -154.51 -0.28 -2.52 16 6 C -0.11 -1.95 8.42 37.16 0.31 -1.64 16 7 C 0.22 5.29 1.80 -27.88 -0.05 5.24 16 8 H 0.06 1.58 5.25 -51.93 -0.27 1.31 16 9 O -0.59 -13.68 11.50 -35.23 -0.41 -14.08 16 10 C -0.55 -15.24 8.89 -34.44 -0.31 -15.55 16 11 H 0.08 2.25 7.38 -52.49 -0.39 1.86 16 12 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 13 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 14 Si 0.90 23.30 26.46 -169.99 -4.50 18.80 16 15 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 16 H -0.27 -6.82 6.40 56.52 0.36 -6.46 16 17 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 19 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 20 H 0.05 0.69 7.28 -51.93 -0.38 0.32 16 21 H 0.05 0.96 7.22 -51.93 -0.37 0.59 16 22 H 0.05 0.68 7.92 -51.93 -0.41 0.27 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.09 1.74 8.05 -51.93 -0.42 1.32 16 25 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 26 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 27 H 0.04 0.68 6.96 -51.93 -0.36 0.32 16 28 H 0.07 1.34 7.24 -51.93 -0.38 0.97 16 29 H 0.36 7.45 7.92 45.56 0.36 7.81 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 241.48 15.07 3.64 3.64 Total: -1.00 -30.29 241.48 -4.79 -35.08 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.86 Total: 4.17 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -0.44 Total: -21.03 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.58 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.41 Total: -14.08 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.50 Total: 18.80 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.29 -4.79 -35.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.232 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds