Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 115.54773 * 2 1 4 4 C 1.53081 * 117.51410 * 214.27847 * 2 1 3 5 5 C 1.52998 * 117.50225 * 145.67066 * 2 1 3 6 6 C 1.52995 * 117.50037 * 215.00350 * 5 2 1 7 7 C 1.52998 * 117.49996 * 359.97438 * 5 2 1 8 8 H 1.09008 * 109.46579 * 36.13901 * 7 5 2 9 9 O 1.42898 * 109.47184 * 156.13514 * 7 5 2 10 10 C 1.50699 * 109.47162 * 276.14070 * 7 5 2 11 11 H 1.07995 * 119.99996 * 354.82519 * 10 7 5 12 12 C 1.37883 * 119.99767 * 174.83672 * 10 7 5 13 13 N 1.31516 * 119.99978 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99938 * 179.97438 * 12 10 7 15 15 H 1.48495 * 109.47143 * 89.99310 * 14 12 10 16 16 H 1.48497 * 109.47055 * 209.99898 * 14 12 10 17 17 H 1.48503 * 109.46772 * 329.99436 * 14 12 10 18 18 H 1.09006 * 109.47060 * 274.32634 * 1 2 3 19 19 H 1.08998 * 109.47753 * 34.32940 * 1 2 3 20 20 H 1.09006 * 109.46879 * 154.33430 * 1 2 3 21 21 H 1.09007 * 109.47113 * 205.67321 * 3 2 1 22 22 H 1.09004 * 109.47159 * 325.67122 * 3 2 1 23 23 H 1.08995 * 109.47123 * 85.67255 * 3 2 1 24 24 H 1.09001 * 117.48932 * 145.03367 * 4 2 1 25 25 H 1.08996 * 117.51150 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.47838 * 200.05205 * 6 5 2 27 27 H 1.08999 * 109.47204 * 320.04812 * 6 5 2 28 28 H 1.09005 * 109.47475 * 80.04722 * 6 5 2 29 29 H 0.96697 * 114.00020 * 60.00467 * 9 7 5 30 30 H 0.96998 * 119.99692 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2372 -1.1219 -0.7647 5 6 2.2365 -1.1207 0.7653 6 6 3.5487 -0.7752 1.4721 7 6 1.3590 -2.1554 1.4726 8 1 0.4705 -2.3497 0.8718 9 8 2.0948 -3.3687 1.6411 10 6 0.9469 -1.6262 2.8221 11 1 1.3446 -0.6874 3.1784 12 6 0.0624 -2.3407 3.6021 13 7 -0.4221 -3.4837 3.1680 14 14 -0.4479 -1.6851 5.2752 15 1 -1.6542 -0.8321 5.1257 16 1 -0.7544 -2.8221 6.1798 17 1 0.6596 -0.8799 5.8500 18 1 -0.3633 0.0775 1.0248 19 1 -0.3634 0.8486 -0.5795 20 1 -0.3633 -0.9263 -0.4451 21 1 3.1822 1.3088 -0.4453 22 1 1.5808 2.0742 -0.5796 23 1 2.2765 1.7416 1.0247 24 1 3.1724 -0.8760 -1.2677 25 1 1.6124 -1.8601 -1.2673 26 1 4.1113 -1.6895 1.6613 27 1 4.1377 -0.1106 0.8402 28 1 3.3322 -0.2795 2.4184 29 1 2.9003 -3.2704 2.1671 30 1 -1.0446 -3.9861 3.7165 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642876499.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = -65.206372 kcal Electronic energy + Delta-G solvation = -11873.497545 eV Core-core repulsion = 9861.139545 eV Total energy + Delta-G solvation = -2012.357999 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.20717 -36.68672 -34.24589 -31.21917 -29.35094 -28.61715 -27.35909 -24.66111 -21.22652 -18.91700 -18.76997 -16.65663 -16.59176 -15.94932 -15.31502 -14.71359 -14.24658 -13.94782 -13.82161 -13.18491 -12.98837 -12.94077 -12.80448 -12.77346 -12.64100 -12.47411 -12.06705 -11.95370 -10.94655 -10.84883 -10.55848 -9.98599 -9.87439 -8.09581 -6.31250 1.39897 1.40508 1.50939 2.40509 2.95733 3.19388 3.94050 3.99077 4.08935 4.33459 4.41098 4.57925 4.80224 4.89062 4.94487 4.99517 5.05061 5.11353 5.16629 5.26475 5.37736 5.43856 5.46105 5.62289 5.72178 5.90744 6.20109 6.81211 7.38757 7.58362 8.95768 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.043156 B = 0.014746 C = 0.013598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.646304 B = 1898.304056 C = 2058.676017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.171 4.171 5 C -0.147 4.147 6 C -0.097 4.097 7 C 0.262 3.738 8 H 0.020 0.980 9 O -0.589 6.589 10 C -0.552 4.552 11 H 0.058 0.942 12 C 0.021 3.979 13 N -0.910 5.910 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.263 1.263 18 H 0.045 0.955 19 H 0.074 0.926 20 H 0.033 0.967 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.355 0.645 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 8.357 -4.110 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.159 4.159 4 C -0.208 4.208 5 C -0.147 4.147 6 C -0.154 4.154 7 C 0.206 3.794 8 H 0.038 0.962 9 O -0.394 6.394 10 C -0.590 4.590 11 H 0.077 0.923 12 C -0.180 4.180 13 N -0.548 5.548 14 Si 0.778 3.222 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.187 1.187 18 H 0.064 0.936 19 H 0.092 0.908 20 H 0.052 0.948 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.125 0.875 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.200 0.800 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.611 7.983 -4.445 10.235 hybrid contribution -0.283 -0.042 1.225 1.258 sum 4.328 7.941 -3.220 9.600 Atomic orbital electron populations 1.21237 0.93255 1.00655 1.01241 1.21606 0.94365 0.91957 1.03868 1.21279 1.00134 0.92764 1.01736 1.23290 1.02244 1.01001 0.94298 1.22414 0.99029 1.00545 0.92740 1.21108 0.93821 1.00772 0.99696 1.18767 0.87740 0.79909 0.93032 0.96216 1.86501 1.40361 1.37300 1.75195 1.21874 1.26968 1.06705 1.03480 0.92336 1.25897 0.95610 0.94742 1.01754 1.70205 1.31059 1.14850 1.38733 0.85653 0.78868 0.77883 0.79768 1.20036 1.21273 1.18714 0.93632 0.90756 0.94795 0.91403 0.91135 0.92764 0.87474 0.91183 0.92846 0.91182 0.93151 0.79974 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 8.67 71.98 0.62 -3.37 16 2 C -0.12 -4.17 2.70 -52.16 -0.14 -4.31 16 3 C -0.10 -2.80 8.72 71.98 0.63 -2.17 16 4 C -0.17 -6.09 9.22 30.62 0.28 -5.81 16 5 C -0.15 -5.95 1.81 -52.18 -0.09 -6.05 16 6 C -0.10 -3.36 8.56 71.98 0.62 -2.74 16 7 C 0.26 13.62 2.11 29.85 0.06 13.68 16 8 H 0.02 1.18 6.80 -2.38 -0.02 1.17 16 9 O -0.59 -31.66 13.00 -148.98 -1.94 -33.60 16 10 C -0.55 -30.19 7.95 25.60 0.20 -29.99 16 11 H 0.06 3.11 6.98 -2.91 -0.02 3.09 16 12 C 0.02 1.18 5.43 84.66 0.46 1.64 16 13 N -0.91 -55.54 13.05 21.45 0.28 -55.26 16 14 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H 0.04 1.93 7.71 -2.38 -0.02 1.91 16 19 H 0.07 2.24 7.92 -2.39 -0.02 2.22 16 20 H 0.03 1.35 7.24 -2.38 -0.02 1.34 16 21 H 0.07 1.61 7.28 -2.38 -0.02 1.59 16 22 H 0.07 1.66 7.92 -2.38 -0.02 1.64 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.11 3.17 8.05 -2.39 -0.02 3.15 16 25 H 0.07 2.68 8.05 -2.39 -0.02 2.66 16 26 H 0.05 1.80 7.07 -2.39 -0.02 1.78 16 27 H 0.07 1.98 6.96 -2.39 -0.02 1.96 16 28 H 0.05 1.83 7.32 -2.38 -0.02 1.81 16 29 H 0.35 16.73 7.71 -74.06 -0.57 16.16 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.25 245.57 3.55 -60.70 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.54 Total: 21.32 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.64 Total: -39.11 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.94 Total: -33.60 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.25 3.55 -60.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876499.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.509 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds