Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 C 1.53000 * 112.85002 * 168.99231 * 3 2 1 5 5 H 1.08999 * 109.46988 * 177.61889 * 4 3 2 6 6 O 1.42892 * 109.47317 * 57.61211 * 4 3 2 7 7 C 1.50703 * 109.47010 * 297.61265 * 4 3 2 8 8 H 1.07999 * 119.99941 * 5.17165 * 7 4 3 9 9 C 1.37880 * 120.00244 * 185.17089 * 7 4 3 10 10 N 1.31516 * 119.99359 * 0.02562 * 9 7 4 11 11 Si 1.86790 * 120.00189 * 180.02562 * 9 7 4 12 12 H 1.48502 * 109.47207 * 90.00073 * 11 9 7 13 13 H 1.48499 * 109.47269 * 210.00093 * 11 9 7 14 14 H 1.48502 * 109.47465 * 330.00124 * 11 9 7 15 15 C 1.53780 * 113.61352 * 37.68660 * 3 2 1 16 16 C 1.53778 * 87.08088 * 220.02002 * 15 3 2 17 17 C 1.53775 * 113.61278 * 300.18753 * 3 2 1 18 18 H 1.09003 * 109.47400 * 53.50416 * 1 2 3 19 19 H 1.09004 * 109.47444 * 173.50979 * 1 2 3 20 20 H 1.09007 * 109.47227 * 293.50811 * 1 2 3 21 21 H 1.08997 * 109.47350 * 119.99679 * 2 1 3 22 22 H 1.08999 * 109.47054 * 240.00411 * 2 1 3 23 23 H 0.96695 * 114.00289 * 300.00287 * 6 4 3 24 24 H 0.97003 * 119.99621 * 179.97438 * 10 9 7 25 25 H 1.09002 * 113.61332 * 334.56447 * 15 3 2 26 26 H 1.08997 * 113.61842 * 105.46818 * 15 3 2 27 27 H 1.09000 * 113.61687 * 270.88524 * 16 15 3 28 28 H 1.08997 * 113.61680 * 139.97768 * 16 15 3 29 29 H 1.08996 * 113.61539 * 254.52697 * 17 3 2 30 30 H 1.09000 * 113.61936 * 25.35130 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5428 1.5414 0.2692 5 1 3.8538 2.5847 0.2151 6 8 4.2532 0.7811 -0.7102 7 6 3.8440 0.9981 1.6423 8 1 3.0581 0.5440 2.2276 9 6 5.1227 1.0807 2.1512 10 7 6.0795 1.6342 1.4385 11 14 5.4961 0.4067 3.8528 12 1 5.8987 -1.0185 3.7433 13 1 6.6018 1.1879 4.4630 14 1 4.2847 0.5148 4.7049 15 6 1.1940 2.3950 0.8614 16 6 1.3785 3.4395 -0.2520 17 6 1.5773 2.2594 -1.2179 18 1 -0.3634 0.6112 -0.8261 19 1 -0.3634 -1.0211 -0.1162 20 1 -0.3634 0.4099 0.9424 21 1 1.8933 -0.5138 0.8900 22 1 1.8932 -0.5138 -0.8900 23 1 4.0261 -0.1588 -0.7191 24 1 6.9791 1.6926 1.7967 25 1 0.1615 2.0690 0.9874 26 1 1.6694 2.6713 1.8025 27 1 2.2682 4.0570 -0.1284 28 1 0.4813 4.0240 -0.4556 29 1 2.3622 2.4264 -1.9555 30 1 0.6504 1.8956 -1.6613 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686138122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = -46.499083 kcal Electronic energy + Delta-G solvation = -11944.081888 eV Core-core repulsion = 9932.535097 eV Total energy + Delta-G solvation = -2011.546790 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.18071 -34.64348 -32.09888 -31.61275 -27.55579 -25.14344 -24.33000 -22.07735 -21.23832 -17.14656 -16.78928 -15.27871 -14.64603 -14.36177 -13.94961 -13.51859 -13.06263 -12.32540 -12.13172 -11.62813 -11.28139 -11.11322 -10.90486 -10.86308 -10.63697 -10.18285 -10.13655 -10.01200 -9.36888 -9.21382 -8.70777 -8.47824 -7.96964 -5.96225 -4.11625 3.30041 3.37225 3.39825 4.42744 5.27923 5.43261 5.44729 5.48029 5.58694 5.76757 5.85346 5.98989 6.26942 6.36894 6.38574 6.49306 6.58928 6.64125 6.67169 6.78420 6.84497 7.05628 7.21901 7.32230 7.82230 7.94401 8.29019 8.93036 9.44633 9.64296 11.08948 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.046124 B = 0.014186 C = 0.013351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.916108 B = 1973.344240 C = 2096.710830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.094 4.094 4 C 0.251 3.749 5 H 0.059 0.941 6 O -0.569 6.569 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.076 3.924 10 N -0.866 5.866 11 Si 0.886 3.114 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.133 4.133 16 C -0.140 4.140 17 C -0.139 4.139 18 H 0.049 0.951 19 H 0.042 0.958 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.343 0.657 24 H 0.259 0.741 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 -0.780 -1.841 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.094 4.094 4 C 0.193 3.807 5 H 0.077 0.923 6 O -0.372 6.372 7 C -0.596 4.596 8 H 0.076 0.924 9 C -0.129 4.129 10 N -0.503 5.503 11 Si 0.714 3.286 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.170 4.170 16 C -0.178 4.178 17 C -0.176 4.176 18 H 0.068 0.932 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.187 0.813 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.180 -0.119 -1.977 8.417 hybrid contribution 0.006 -0.855 1.153 1.435 sum -8.174 -0.973 -0.824 8.273 Atomic orbital electron populations 1.21913 0.97489 1.00124 1.01246 1.21312 0.93975 0.97292 1.01838 1.22645 0.99465 0.92798 0.94488 1.19174 0.82020 0.92904 0.86566 0.92340 1.86550 1.68897 1.21561 1.60181 1.21645 0.94821 1.41158 1.01965 0.92441 1.25059 0.96520 0.94415 0.96879 1.70063 1.01383 1.42274 1.36539 0.86716 0.78013 0.79078 0.84825 1.20628 1.21243 1.19863 1.22993 0.99152 0.96647 0.98202 1.22756 1.00588 0.96364 0.98078 1.23014 1.00163 0.97243 0.97211 0.93185 0.93938 0.92832 0.91037 0.92868 0.81312 0.93081 0.91067 0.91026 0.90454 0.93068 0.91943 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.80 37.15 0.33 -1.95 16 2 C -0.11 -1.95 4.92 -26.73 -0.13 -2.08 16 3 C -0.09 -1.89 0.60 -153.70 -0.09 -1.99 16 4 C 0.25 6.33 2.18 -27.88 -0.06 6.27 16 5 H 0.06 1.66 7.31 -51.93 -0.38 1.28 16 6 O -0.57 -14.83 12.99 -35.23 -0.46 -15.29 16 7 C -0.56 -15.12 7.59 -34.44 -0.26 -15.39 16 8 H 0.06 1.53 6.88 -52.49 -0.36 1.17 16 9 C 0.08 2.15 5.42 -17.82 -0.10 2.05 16 10 N -0.87 -25.86 13.05 55.43 0.72 -25.13 16 11 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 C -0.13 -2.49 6.77 -25.92 -0.18 -2.66 16 16 C -0.14 -2.48 7.73 -25.92 -0.20 -2.68 16 17 C -0.14 -2.53 7.04 -25.92 -0.18 -2.72 16 18 H 0.05 0.72 6.23 -51.93 -0.32 0.39 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.79 6.51 -51.92 -0.34 0.46 16 21 H 0.07 1.42 6.73 -51.93 -0.35 1.07 16 22 H 0.05 0.94 7.60 -51.93 -0.39 0.54 16 23 H 0.34 7.97 7.85 45.56 0.36 8.33 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.07 1.18 5.61 -51.93 -0.29 0.89 16 26 H 0.07 1.47 7.75 -51.93 -0.40 1.07 16 27 H 0.08 1.46 7.60 -51.93 -0.39 1.06 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.07 1.09 6.31 -51.93 -0.33 0.76 16 LS Contribution 237.05 15.07 3.57 3.57 Total: -1.00 -29.52 237.05 -5.66 -35.19 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.61 Total: 6.51 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -0.87 Total: -21.13 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.72 Total: -25.13 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.46 Total: -15.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.52 -5.66 -35.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.314 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds